Variant report

Variant	rs6475004
Chromosome Location	chr9:16069629-16069630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10217349	0.82[AMR][1000 genomes]
rs12683161	0.82[AMR][1000 genomes]
rs2987093	0.89[EUR][1000 genomes]
rs4961636	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4961645	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4961647	0.84[AMR][1000 genomes]
rs4961648	0.80[AMR][1000 genomes]
rs6475003	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7041814	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7048148	0.84[AMR][1000 genomes]
rs9298745	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv525782	chr9:16061960-16071439	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757319	chr9:16063191-16082467	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759672	chr9:16063191-16082467	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756177	chr9:16063191-16082467	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16048600-16071400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16065600-16070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:16068400-16070800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16068400-16071200	Enhancers	NH-A	brain
5	chr9:16068600-16070200	Enhancers	HSMMtube	muscle
6	chr9:16068600-16071000	Enhancers	Fetal Stomach	stomach
7	chr9:16068600-16072000	Enhancers	Fetal Muscle Leg	muscle
8	chr9:16068800-16071200	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:16069000-16070000	Enhancers	Osteobl	bone
10	chr9:16069000-16070600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:16069200-16070400	Enhancers	Fetal Heart	heart
12	chr9:16069200-16070600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:16069200-16070600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:16069200-16071400	Enhancers	Fetal Kidney	kidney
15	chr9:16069400-16070000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:16069400-16070000	Enhancers	HMEC	breast
17	chr9:16069400-16070200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:16069400-16070400	Enhancers	HSMM	muscle
19	chr9:16069400-16070600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:16069400-16070600	Enhancers	Fetal Lung	lung
21	chr9:16069400-16070800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:16069400-16070800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:16069400-16071600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:16069400-16071600	Enhancers	Fetal Thymus	thymus
25	chr9:16069600-16070000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:16069600-16070000	Enhancers	NHDF-Ad	bronchial
27	chr9:16069600-16070400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:16069600-16070400	Enhancers	NHLF	lung
29	chr9:16069600-16070800	Enhancers	Adipose Nuclei	Adipose
30	chr9:16069600-16071200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:16069600-16071400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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