Variant report
| Variant | rs6475168 |
|---|---|
| Chromosome Location | chr9:17717690-17717691 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10114474 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs10491539 | 0.89[CHB][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10963227 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12554313 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1536078 | 0.94[CEU][hapmap] |
| rs16935912 | 0.83[JPT][hapmap];0.82[MEX][hapmap] |
| rs2224957 | 0.94[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3808694 | 0.81[ASN][1000 genomes] |
| rs3824379 | 0.83[JPT][hapmap] |
| rs6475166 | 0.94[CHB][hapmap] |
| rs67874049 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73422659 | 0.80[ASN][1000 genomes] |
| rs7874110 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7874127 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016971 | chr9:17648242-17720176 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 2 | nsv1021022 | chr9:17649360-17723730 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv892675 | chr9:17694823-17790526 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv466279 | chr9:17699981-17726581 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv613705 | chr9:17699981-17726581 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
