Variant report

Variant	rs6477256
Chromosome Location	chr9:8065584-8065585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10120639	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10758922	0.88[EUR][1000 genomes]
rs10815741	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10815742	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10976733	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10976734	0.90[EUR][1000 genomes]
rs10976757	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1322460	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1407461	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1570326	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1575322	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2146083	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2224600	0.84[EUR][1000 genomes]
rs4742432	0.87[EUR][1000 genomes]
rs7024333	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7025594	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039072	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7851010	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7861629	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9407396	0.81[EUR][1000 genomes]
rs972824	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs995315	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1032967	chr9:7985651-8088281	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892219	chr9:7997936-8087483	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv613279	chr9:8009428-8097977	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1028133	chr9:8015209-8116186	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv892220	chr9:8031935-8102278	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8065200-8065600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:8065400-8065800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:8065400-8065800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr9:8065400-8065800	Active TSS	Stomach Smooth Muscle	stomach
5	chr9:8065400-8065800	Active TSS	A549	lung
6	chr9:8065400-8065800	Active TSS	Hela-S3	cervix

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