Variant report

Variant	rs6477294
Chromosome Location	chr9:8355902-8355903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511491	0.81[CHB][hapmap]
rs10739157	0.82[CHB][hapmap]
rs10739158	0.81[CHB][hapmap]
rs10739159	0.81[CHB][hapmap]
rs10758961	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10758963	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs10815828	0.81[CHB][hapmap]
rs10815832	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs10976987	0.86[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10976989	0.85[CHB][hapmap]
rs10977006	0.81[CHB][hapmap]
rs10977014	1.00[CHB][hapmap]
rs1156294	0.95[CHB][hapmap]
rs1392518	0.81[CHB][hapmap]
rs1392519	1.00[CHB][hapmap]
rs1500320	0.86[CHB][hapmap]
rs1500323	0.83[CEU][hapmap];0.80[CHB][hapmap]
rs16927668	0.82[CHB][hapmap]
rs20513	0.95[CHB][hapmap]
rs2381741	1.00[CHB][hapmap]
rs35972185	0.88[ASN][1000 genomes]
rs3736381	0.80[CHB][hapmap]
rs3765142	0.81[CHB][hapmap]
rs4742488	0.95[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs6477295	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6477296	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6477299	0.95[CHB][hapmap]
rs7018576	0.95[CHB][hapmap]
rs7022162	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7038767	0.95[CHB][hapmap]
rs7857177	0.81[CHB][hapmap]
rs7864500	0.86[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892225	chr9:8345072-8379313	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain
7	chr9:8341800-8372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:8350000-8363800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8350200-8364600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:8350200-8372400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:8350400-8363200	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8350400-8364000	Weak transcription	Fetal Heart	heart
13	chr9:8353200-8364200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:8355800-8356400	Weak transcription	Fetal Lung	lung

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