Variant report

Variant	rs3736381
Chromosome Location	chr9:8341445-8341446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:8341198..8343962-chr9:8344780..8346440,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10511491	0.95[CHB][hapmap]
rs10732364	0.86[CHB][hapmap]
rs10739157	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10739158	0.95[CHB][hapmap]
rs10739159	0.95[CHB][hapmap]
rs10739160	0.84[CHB][hapmap]
rs10758957	0.82[CHB][hapmap]
rs10758963	0.86[CEU][hapmap];0.95[CHB][hapmap]
rs10815823	0.90[CHB][hapmap]
rs10815827	0.86[CHB][hapmap]
rs10815828	0.95[CHB][hapmap]
rs10815832	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10976968	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976987	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs10977006	0.90[CHB][hapmap]
rs10977014	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11794527	0.82[CHB][hapmap]
rs1392518	0.90[CHB][hapmap]
rs1500321	0.86[CHB][hapmap]
rs1500322	0.90[CHB][hapmap]
rs1500323	0.90[CHB][hapmap]
rs16927668	0.95[CHB][hapmap]
rs35972185	0.80[ASN][1000 genomes]
rs3739578	0.81[JPT][hapmap]
rs3765142	0.90[CHB][hapmap]
rs3765143	0.82[CHB][hapmap]
rs3847290	0.86[CHB][hapmap]
rs4740935	0.86[CHB][hapmap]
rs4740936	0.86[CHB][hapmap]
rs4740937	0.85[CHB][hapmap]
rs4740939	0.86[CHB][hapmap]
rs4740940	0.86[CHB][hapmap]
rs4740941	0.86[CHB][hapmap]
rs4742490	0.84[CHB][hapmap]
rs6477294	0.80[CHB][hapmap]
rs6477295	0.86[CEU][hapmap]
rs6477299	0.80[JPT][hapmap]
rs7022162	0.86[CEU][hapmap];0.85[CHB][hapmap]
rs7028304	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7032880	0.90[CHB][hapmap]
rs7851892	0.86[CHB][hapmap]
rs7853112	0.90[CHB][hapmap]
rs7856922	0.86[CHB][hapmap]
rs7857177	0.95[CHB][hapmap]
rs7864500	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7873084	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2830193	chr9:8337939-8345923	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv523768	chr9:8339606-8342540	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8323400-8341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:8323800-8341600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:8324000-8345000	Weak transcription	Fetal Brain Male	brain
4	chr9:8330000-8348600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:8330200-8342200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
7	chr9:8331400-8342000	Weak transcription	Fetal Kidney	kidney
8	chr9:8336800-8341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:8337400-8341800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:8338600-8342000	Weak transcription	Dnd41	blood
11	chr9:8338800-8348600	Weak transcription	Brain Angular Gyrus	brain
12	chr9:8339200-8348000	Weak transcription	Brain Substantia Nigra	brain
13	chr9:8339400-8345600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:8339600-8342600	Weak transcription	Fetal Lung	lung
15	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
16	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:8339800-8347400	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:8340000-8346000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:8340200-8348000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:8340200-8348600	Weak transcription	Ovary	ovary
21	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:8340400-8346800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:8340600-8342400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain

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