Variant report

Variant	rs3765143
Chromosome Location	chr9:8339233-8339234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10511491	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10732364	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10733545	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10733546	0.81[ASN][1000 genomes]
rs10739156	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10739157	0.84[CHB][hapmap]
rs10739158	0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs10739159	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs10739160	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10758956	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10758957	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10758958	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10758959	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10758963	0.87[CHB][hapmap]
rs10815823	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10815826	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10815827	0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10815828	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs10815829	0.85[ASN][1000 genomes]
rs10815830	0.85[ASN][1000 genomes]
rs10815832	0.83[CHB][hapmap]
rs10976970	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10976987	0.81[CHB][hapmap]
rs10976989	0.83[CHB][hapmap]
rs10977006	0.91[CHB][hapmap]
rs11794527	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12238805	0.87[ASN][1000 genomes]
rs12682837	0.81[ASN][1000 genomes]
rs1500321	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs1500323	0.83[CHB][hapmap]
rs1587485	0.81[ASN][1000 genomes]
rs28891834	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3736381	0.82[CHB][hapmap]
rs3765142	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780337	0.91[ASN][1000 genomes]
rs3847290	0.96[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs3902903	0.85[ASN][1000 genomes]
rs4740935	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4740936	0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4740937	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4740939	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4740940	0.96[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4740941	0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742483	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742485	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742490	0.87[CHB][hapmap]
rs7032880	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7044926	0.89[YRI][hapmap]
rs7848626	0.81[JPT][hapmap]
rs7850069	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7851892	0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7853112	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7856860	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7856922	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7857177	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7864500	0.83[CHB][hapmap]
rs7873177	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2830193	chr9:8337939-8345923	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8323400-8341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:8323800-8341600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:8324000-8345000	Weak transcription	Fetal Brain Male	brain
4	chr9:8329800-8339800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:8330000-8348600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:8330200-8339800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:8330200-8339800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:8330200-8340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:8330200-8340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:8330200-8340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:8330200-8342200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
13	chr9:8330400-8340000	Weak transcription	Placenta	Placenta
14	chr9:8331400-8342000	Weak transcription	Fetal Kidney	kidney
15	chr9:8336800-8341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:8337200-8340400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:8337400-8339600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:8337400-8339600	Strong transcription	Brain Germinal Matrix	brain
19	chr9:8337400-8340200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:8337400-8340200	Strong transcription	Brain Cingulate Gyrus	brain
21	chr9:8337400-8340600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:8337400-8340800	Strong transcription	Fetal Brain Female	brain
23	chr9:8337400-8341800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:8337600-8340000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:8337600-8340400	Strong transcription	Primary hematopoietic stem cells	blood
26	chr9:8337800-8339400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:8337800-8339600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:8337800-8339600	Enhancers	Ovary	ovary
29	chr9:8338000-8339600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:8338200-8339600	Enhancers	HUVEC	blood vessel
31	chr9:8338200-8339800	Strong transcription	Brain Hippocampus Middle	brain
32	chr9:8338600-8339400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr9:8338600-8339400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:8338600-8339400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:8338600-8342000	Weak transcription	Dnd41	blood
36	chr9:8338800-8348600	Weak transcription	Brain Angular Gyrus	brain
37	chr9:8339000-8339600	Strong transcription	Fetal Muscle Leg	muscle
38	chr9:8339000-8340600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr9:8339200-8339600	Strong transcription	Fetal Lung	lung
40	chr9:8339200-8348000	Weak transcription	Brain Substantia Nigra	brain

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