Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10511491	0.81[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs10732364	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs10733546	0.82[ASN][1000 genomes]
rs10739155	0.86[GIH][hapmap];0.86[TSI][hapmap]
rs10739158	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs10739159	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs10758957	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10815823	0.82[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap]
rs10815827	0.90[JPT][hapmap]
rs10815828	0.86[JPT][hapmap]
rs10976946	0.82[JPT][hapmap]
rs10977006	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs11794527	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs3765142	0.95[JPT][hapmap];0.81[TSI][hapmap]
rs3765143	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs3847290	0.81[JPT][hapmap]
rs4740935	0.94[JPT][hapmap]
rs4740936	0.90[JPT][hapmap]
rs4740937	0.88[JPT][hapmap]
rs4740939	0.86[JPT][hapmap]
rs4740940	0.86[JPT][hapmap]
rs4740941	0.86[JPT][hapmap]
rs7032880	0.82[CHB][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs7848626	0.91[JPT][hapmap]
rs7851892	0.90[JPT][hapmap]
rs7853112	0.82[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap]
rs7856922	0.85[JPT][hapmap]
rs7857177	0.86[JPT][hapmap]
rs7868789	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10733545	CD274	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
2	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
6	chr9:8312800-8322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:8314600-8321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:8315400-8323000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8316000-8329600	Weak transcription	Ovary	ovary
11	chr9:8318200-8329000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:8319000-8322400	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8319000-8322800	Weak transcription	Fetal Brain Male	brain
14	chr9:8319200-8322400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:8319800-8320800	Strong transcription	Fetal Lung	lung
16	chr9:8320200-8322600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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