Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10121276	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10733545	0.82[JPT][hapmap]
rs12552493	0.85[CEU][hapmap]
rs12554953	0.81[CHB][hapmap]
rs1500315	0.86[CHB][hapmap]
rs16927547	0.85[CHB][hapmap]
rs20514	0.81[CHB][hapmap]
rs3739578	1.00[CHB][hapmap]
rs3765142	0.82[JPT][hapmap]
rs3780336	0.85[CHB][hapmap]
rs3843579	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3847291	0.81[CHB][hapmap]
rs4268178	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4740935	0.80[JPT][hapmap]
rs4742487	0.86[CEU][hapmap];0.90[CHB][hapmap]
rs7029813	0.81[ASN][1000 genomes]
rs7044532	0.85[ASN][1000 genomes]
rs7848626	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7848705	0.85[CHB][hapmap]
rs7867924	0.94[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7868789	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7873084	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
2	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
6	chr9:8312800-8322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:8314600-8321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:8315400-8323000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8316000-8329600	Weak transcription	Ovary	ovary
11	chr9:8318200-8329000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:8319000-8322400	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8319000-8322800	Weak transcription	Fetal Brain Male	brain
14	chr9:8319200-8322400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:8320200-8322600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:8320800-8323000	Weak transcription	Fetal Lung	lung

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