Variant report

Variant	rs7867924
Chromosome Location	chr9:8318851-8318852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10121276	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10758953	0.85[ASN][1000 genomes]
rs10976946	0.94[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12552493	0.94[CEU][hapmap]
rs1500317	1.00[YRI][hapmap]
rs1818072	1.00[YRI][hapmap]
rs1846695	1.00[YRI][hapmap]
rs3843579	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4268178	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742487	0.88[CEU][hapmap]
rs6477292	1.00[YRI][hapmap]
rs7848626	0.94[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7854145	1.00[YRI][hapmap]
rs7863871	1.00[YRI][hapmap]
rs7868789	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
2	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8311000-8319600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
7	chr9:8312800-8322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8314400-8319800	Weak transcription	Fetal Lung	lung
10	chr9:8314600-8321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:8315400-8323000	Weak transcription	Brain Anterior Caudate	brain
12	chr9:8316000-8329600	Weak transcription	Ovary	ovary
13	chr9:8318200-8329000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:8318600-8319000	Enhancers	Brain Hippocampus Middle	brain
15	chr9:8318600-8319000	Enhancers	Fetal Brain Male	brain
16	chr9:8318600-8319200	Enhancers	Brain Cingulate Gyrus	brain
17	chr9:8318600-8319200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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