Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10121276	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10122381	0.81[ASN][1000 genomes]
rs10758950	0.82[ASN][1000 genomes]
rs10976918	0.82[ASN][1000 genomes]
rs10976921	0.83[ASN][1000 genomes]
rs10976922	0.83[ASN][1000 genomes]
rs10976923	0.83[ASN][1000 genomes]
rs10976946	0.90[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1500315	0.85[CHB][hapmap]
rs1909760	0.82[ASN][1000 genomes]
rs3739578	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs3847285	0.82[ASN][1000 genomes]
rs4084051	0.82[ASN][1000 genomes]
rs4742487	0.80[CHB][hapmap];0.88[CHD][hapmap]
rs7020531	0.82[ASN][1000 genomes]
rs7032230	0.82[ASN][1000 genomes]
rs7044532	0.82[ASN][1000 genomes]
rs7848626	0.81[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7867924	0.94[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7868789	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7873084	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs989932	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	esv2762787	chr9:8282283-8310704	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3337718	chr9:8301001-8318939	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3843579	CD274	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8309200-8315600	Weak transcription	Fetal Kidney	kidney

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