Variant report

Variant	rs6479559
Chromosome Location	chr9:97406124-97406125
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12345842	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1536859	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1536860	0.86[EUR][1000 genomes]
rs1769251	1.00[EUR][1000 genomes]
rs2679606	0.97[EUR][1000 genomes]
rs2790389	0.84[EUR][1000 genomes]
rs2987899	0.97[EUR][1000 genomes]
rs2987900	0.97[EUR][1000 genomes]
rs67894593	0.97[EUR][1000 genomes]
rs7025253	0.97[EUR][1000 genomes]
rs7041552	0.84[EUR][1000 genomes]
rs7044650	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs781648	0.91[EUR][1000 genomes]
rs781649	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402200-97410400	Weak transcription	Esophagus	oesophagus
2	chr9:97402400-97406600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
4	chr9:97402600-97411000	Weak transcription	Gastric	stomach
5	chr9:97402600-97415400	Weak transcription	Spleen	Spleen
6	chr9:97402800-97411600	Weak transcription	Primary B cells from cord blood	blood
7	chr9:97403000-97406800	Weak transcription	Fetal Intestine Large	intestine
8	chr9:97403000-97406800	Weak transcription	Placenta	Placenta
9	chr9:97403000-97410600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:97403200-97406600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:97403400-97406800	Weak transcription	Fetal Intestine Small	intestine
12	chr9:97404000-97408200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:97404800-97406200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:97405000-97406400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:97405000-97410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:97405200-97411200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:97405400-97407200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr9:97405600-97407200	Bivalent Enhancer	HepG2	liver
19	chr9:97405600-97407600	Enhancers	Stomach Mucosa	stomach
20	chr9:97405800-97407000	Enhancers	Fetal Muscle Trunk	muscle
21	chr9:97405800-97410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:97405800-97418400	Weak transcription	Fetal Stomach	stomach
23	chr9:97406000-97406200	Enhancers	Lung	lung
24	chr9:97406000-97407200	Enhancers	Hela-S3	cervix

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