Variant report

Variant	rs2987900
Chromosome Location	chr9:97355470-97355471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12345842	0.97[EUR][1000 genomes]
rs1536859	0.94[EUR][1000 genomes]
rs1536860	0.83[EUR][1000 genomes]
rs1769251	0.97[EUR][1000 genomes]
rs1769259	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2679606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790389	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2987899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479559	0.97[EUR][1000 genomes]
rs67894593	0.94[EUR][1000 genomes]
rs7025253	0.94[EUR][1000 genomes]
rs7041552	0.81[EUR][1000 genomes]
rs7044650	0.97[EUR][1000 genomes]
rs781648	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs781649	0.94[EUR][1000 genomes]
rs9409547	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv466436	chr9:97343620-97369149	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv614917	chr9:97343620-97369149	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97347600-97374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97351800-97369200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:97354400-97355600	Weak transcription	Psoas Muscle	Psoas
4	chr9:97354600-97355800	Weak transcription	Gastric	stomach
5	chr9:97354600-97356000	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr9:97354600-97356400	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr9:97355200-97355800	Active TSS	Fetal Muscle Trunk	muscle
8	chr9:97355200-97355800	Active TSS	Stomach Mucosa	stomach
9	chr9:97355200-97356000	Active TSS	Fetal Muscle Leg	muscle
10	chr9:97355200-97356200	Bivalent/Poised TSS	Fetal Stomach	stomach
11	chr9:97355400-97355600	Flanking Active TSS	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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