Variant report

Variant	rs1769259
Chromosome Location	chr9:97369149-97369150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12345842	0.97[EUR][1000 genomes]
rs1536859	0.94[EUR][1000 genomes]
rs1536860	0.83[EUR][1000 genomes]
rs1769251	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1769257	0.86[AFR][1000 genomes]
rs2679606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790389	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2987899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2987900	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35600708	1.00[LWK][hapmap]
rs6479559	0.97[EUR][1000 genomes]
rs667424	0.83[AFR][1000 genomes]
rs67894593	0.94[EUR][1000 genomes]
rs7025253	0.94[EUR][1000 genomes]
rs7041552	0.81[EUR][1000 genomes]
rs7044650	0.97[EUR][1000 genomes]
rs781648	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs781649	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466436	chr9:97343620-97369149	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv614917	chr9:97343620-97369149	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97347600-97374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97351800-97369200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:97364400-97382800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr9:97364800-97382800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr9:97365000-97375400	Genic enhancers	Fetal Intestine Small	intestine
6	chr9:97365000-97376200	Genic enhancers	Liver	Liver
7	chr9:97365200-97369200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:97365800-97370400	Weak transcription	Pancreas	Pancrea
9	chr9:97365800-97373800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:97366000-97369200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:97366000-97369200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:97366000-97369600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:97366000-97369600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:97366200-97369800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:97366200-97369800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:97366200-97371600	Weak transcription	Fetal Heart	heart
17	chr9:97366400-97369400	Weak transcription	Fetal Lung	lung
18	chr9:97366600-97370400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:97366600-97384400	Weak transcription	Small Intestine	intestine
20	chr9:97366800-97369200	Genic enhancers	Fetal Intestine Large	intestine
21	chr9:97366800-97369800	Weak transcription	Fetal Kidney	kidney
22	chr9:97366800-97369800	Weak transcription	Fetal Stomach	stomach
23	chr9:97367000-97369200	Genic enhancers	Duodenum Mucosa	Duodenum
24	chr9:97367000-97370800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:97368200-97369400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:97368200-97370000	Strong transcription	Lung	lung
27	chr9:97368400-97369200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr9:97368400-97375200	Enhancers	Stomach Mucosa	stomach
29	chr9:97368800-97369400	Flanking Active TSS	Colonic Mucosa	Colon
30	chr9:97368800-97369800	Enhancers	Gastric	stomach
31	chr9:97368800-97370800	Flanking Active TSS	HepG2	liver

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