Variant report

Variant	rs6479611
Chromosome Location	chr9:93404249-93404250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11792971	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1360470	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1870661	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55652173	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62558495	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv893566	chr9:93209923-93439259	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv482757	chr9:93356095-93543903	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93401800-93405600	Active TSS	Brain Angular Gyrus	brain
2	chr9:93402200-93405600	Active TSS	Brain Cingulate Gyrus	brain
3	chr9:93402200-93405600	Active TSS	Brain Hippocampus Middle	brain
4	chr9:93402200-93405600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:93402800-93406000	Active TSS	Brain Anterior Caudate	brain
6	chr9:93403200-93406000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr9:93403600-93405000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:93403600-93405600	Active TSS	Fetal Brain Male	brain
9	chr9:93403800-93405800	Active TSS	Brain Germinal Matrix	brain
10	chr9:93404000-93404400	Flanking Active TSS	Fetal Brain Female	brain
11	chr9:93404000-93405000	Bivalent/Poised TSS	Fetal Kidney	kidney
12	chr9:93404000-93405800	Active TSS	Brain Substantia Nigra	brain
13	chr9:93404200-93404400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:93404200-93404400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr9:93404200-93404400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr9:93404200-93404400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr9:93404200-93404400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr9:93404200-93404600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:93404200-93404600	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:93404200-93404600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
21	chr9:93404200-93404600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr9:93404200-93404600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
23	chr9:93404200-93404800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:93404200-93405000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr9:93404200-93405400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:93404200-93405600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:93404200-93405800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr9:93404200-93405800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links