Variant report

Variant	rs6481982
Chromosome Location	chr10:19861842-19861843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10128317	0.92[EUR][1000 genomes]
rs10430561	0.85[EUR][1000 genomes]
rs10740912	0.85[EUR][1000 genomes]
rs10740913	0.92[EUR][1000 genomes]
rs10740916	0.86[EUR][1000 genomes]
rs10740921	0.88[EUR][1000 genomes]
rs10764051	0.85[EUR][1000 genomes]
rs10764080	0.86[EUR][1000 genomes]
rs10827534	0.85[EUR][1000 genomes]
rs10827538	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10827551	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10827645	0.91[ASN][1000 genomes]
rs11010274	0.86[EUR][1000 genomes]
rs11010275	0.85[EUR][1000 genomes]
rs11010436	0.88[EUR][1000 genomes]
rs1338612	0.98[EUR][1000 genomes]
rs1537352	0.87[EUR][1000 genomes]
rs1855153	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1855154	0.85[EUR][1000 genomes]
rs1855155	0.85[EUR][1000 genomes]
rs2065496	0.81[EUR][1000 genomes]
rs2358417	0.84[EUR][1000 genomes]
rs2358419	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs3843022	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3844354	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3844355	0.85[EUR][1000 genomes]
rs3844356	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3844357	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3844359	0.91[ASN][1000 genomes]
rs3852473	0.85[EUR][1000 genomes]
rs3852474	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3852475	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3852477	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3864837	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3864838	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3904893	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3904894	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3904895	0.85[EUR][1000 genomes]
rs4381258	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4747377	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748596	0.86[EUR][1000 genomes]
rs4748599	0.94[EUR][1000 genomes]
rs4748602	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4748603	0.91[ASN][1000 genomes]
rs6481966	0.85[EUR][1000 genomes]
rs6481967	0.85[EUR][1000 genomes]
rs6481969	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6481971	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6481972	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6481973	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6482024	0.83[ASN][1000 genomes]
rs7071846	0.84[EUR][1000 genomes]
rs7072649	0.92[EUR][1000 genomes]
rs7074543	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7077392	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7078195	0.85[EUR][1000 genomes]
rs7083270	0.85[EUR][1000 genomes]
rs7083715	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7084915	0.85[EUR][1000 genomes]
rs7085701	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7092917	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7099094	0.89[EUR][1000 genomes]
rs7100242	0.85[EUR][1000 genomes]
rs7896333	0.85[EUR][1000 genomes]
rs7900285	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7912969	0.85[EUR][1000 genomes]
rs7913304	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759737	chr10:19694144-20024994	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758211	chr10:19714637-20024994	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1042877	chr10:19749314-20067572	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2757373	chr10:19776910-20004996	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv34306	chr10:19777069-20117944	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv3518965	chr10:19786251-20061305	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3518966	chr10:19786310-20061256	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv894931	chr10:19796958-19987644	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv825266	chr10:19807019-20037182	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv831804	chr10:19859400-20035593	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19839800-19875400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19853000-19866400	Weak transcription	Aorta	Aorta
3	chr10:19859200-19884200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:19860800-19862400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:19861000-19863800	Weak transcription	Right Atrium	heart
6	chr10:19861000-19866800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:19861200-19862200	Weak transcription	Ovary	ovary
8	chr10:19861400-19866800	Weak transcription	Fetal Lung	lung
9	chr10:19861800-19862400	Strong transcription	Fetal Intestine Large	intestine
10	chr10:19861800-19864800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links