Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10400156	0.83[ASN][1000 genomes]
rs10828225	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs10828226	0.83[ASN][1000 genomes]
rs11012609	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11012610	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11012611	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11012612	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11815918	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12262659	1.00[CHB][hapmap]
rs12762419	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1482899	0.83[ASN][1000 genomes]
rs2035434	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2359929	0.83[ASN][1000 genomes]
rs34894543	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35843370	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3847375	1.00[CHB][hapmap]
rs67699494	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67755252	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7076532	0.83[ASN][1000 genomes]
rs7083609	0.84[ASN][1000 genomes]
rs7085330	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7090954	0.83[ASN][1000 genomes]
rs7905278	0.83[ASN][1000 genomes]
rs7910610	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs7917063	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7921613	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21522000-21549600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:21522200-21549200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:21524000-21548000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:21524000-21549000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:21524000-21549400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:21530600-21549600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:21539600-21549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:21542800-21548200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:21543200-21550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: