Variant report

Variant	rs6484254
Chromosome Location	chr11:26923407-26923408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11029732	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11601468	0.82[EUR][1000 genomes]
rs12363428	0.81[AMR][1000 genomes]
rs12363792	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12787033	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12801499	0.87[EUR][1000 genomes]
rs12801663	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1597440	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16916298	0.83[EUR][1000 genomes]
rs17309503	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35732548	0.83[EUR][1000 genomes]
rs56023146	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7102662	0.82[EUR][1000 genomes]
rs7129261	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs969641	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26913800-26927200	Weak transcription	Esophagus	oesophagus
2	chr11:26918800-26925400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:26922200-26923600	Enhancers	Colon Smooth Muscle	Colon
4	chr11:26923000-26925400	Weak transcription	Fetal Stomach	stomach
5	chr11:26923000-26925800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:26923000-26927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:26923200-26925200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:26923200-26925200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:26923400-26925400	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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