Variant report

Variant	rs969641
Chromosome Location	chr11:26867894-26867895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11029732	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029750	1.00[ASN][1000 genomes]
rs11601468	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12363428	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12363792	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787033	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796637	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12796849	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798964	1.00[ASN][1000 genomes]
rs12801499	0.88[AFR][1000 genomes]
rs12801663	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597440	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916298	0.81[EUR][1000 genomes]
rs17243741	1.00[ASN][1000 genomes]
rs34496624	1.00[ASN][1000 genomes]
rs35732548	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56023146	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61888307	1.00[ASN][1000 genomes]
rs6484254	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7102662	0.82[EUR][1000 genomes]
rs7129261	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883217	1.00[ASN][1000 genomes]
rs72884825	1.00[ASN][1000 genomes]
rs72886737	1.00[ASN][1000 genomes]
rs72886755	1.00[ASN][1000 genomes]
rs72888609	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897142	chr11:26786121-26903063	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv467780	chr11:26792264-26876833	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv553909	chr11:26792264-26876833	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897143	chr11:26793052-26880991	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv897144	chr11:26793052-26903063	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv897145	chr11:26794368-26876833	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv553911	chr11:26850692-26905496	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26861800-26870600	Weak transcription	Fetal Kidney	kidney
2	chr11:26862400-26870600	Weak transcription	Psoas Muscle	Psoas
3	chr11:26864200-26871000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:26864400-26868800	Weak transcription	Adipose Nuclei	Adipose
5	chr11:26864800-26868000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:26864800-26869200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:26865000-26869800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:26865000-26870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:26865000-26870600	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:26865200-26869200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:26865200-26870400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:26865200-26879200	Weak transcription	Aorta	Aorta
13	chr11:26865400-26868800	Weak transcription	NHDF-Ad	bronchial
14	chr11:26865400-26870000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:26865800-26870200	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:26866000-26868400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:26866000-26870200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:26866800-26868600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:26867000-26869200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:26867000-26869200	Weak transcription	Osteobl	bone
21	chr11:26867600-26868000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:26867800-26868000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:26867800-26869400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:26867800-26870600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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