Variant report

Variant	rs12798964
Chromosome Location	chr11:26977103-26977104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11029732	1.00[ASN][1000 genomes]
rs11029750	1.00[ASN][1000 genomes]
rs12363792	1.00[ASN][1000 genomes]
rs12787033	1.00[ASN][1000 genomes]
rs12796849	1.00[ASN][1000 genomes]
rs12801663	1.00[ASN][1000 genomes]
rs1597440	1.00[ASN][1000 genomes]
rs17243741	1.00[ASN][1000 genomes]
rs34496624	1.00[ASN][1000 genomes]
rs56023146	1.00[ASN][1000 genomes]
rs61888307	1.00[ASN][1000 genomes]
rs7129261	1.00[ASN][1000 genomes]
rs72886737	1.00[ASN][1000 genomes]
rs72886755	1.00[ASN][1000 genomes]
rs72888609	1.00[ASN][1000 genomes]
rs969641	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26972000-26981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26973200-26979600	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:26975600-26980200	Weak transcription	NHDF-Ad	bronchial
4	chr11:26975800-26979400	Weak transcription	Fetal Stomach	stomach
5	chr11:26976000-26981600	Weak transcription	Osteobl	bone
6	chr11:26976200-26979600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:26976200-26981600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:26976400-26979000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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