Variant report

Variant	rs72886737
Chromosome Location	chr11:26799047-26799048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11029732	1.00[ASN][1000 genomes]
rs11029750	1.00[ASN][1000 genomes]
rs12363792	1.00[ASN][1000 genomes]
rs12787033	1.00[ASN][1000 genomes]
rs12796849	1.00[ASN][1000 genomes]
rs12798964	1.00[ASN][1000 genomes]
rs12801663	1.00[ASN][1000 genomes]
rs1597440	1.00[ASN][1000 genomes]
rs17243741	1.00[ASN][1000 genomes]
rs34496624	1.00[ASN][1000 genomes]
rs56023146	1.00[ASN][1000 genomes]
rs7129261	1.00[ASN][1000 genomes]
rs72883217	1.00[ASN][1000 genomes]
rs72884825	1.00[ASN][1000 genomes]
rs72886755	1.00[ASN][1000 genomes]
rs72888609	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs969641	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897142	chr11:26786121-26903063	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv467780	chr11:26792264-26876833	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv553909	chr11:26792264-26876833	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897143	chr11:26793052-26880991	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv897144	chr11:26793052-26903063	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553910	chr11:26794368-26863615	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv897145	chr11:26794368-26876833	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26791000-26799600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26792000-26801400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:26798600-26799200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:26798600-26799200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:26798600-26799400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:26798600-26799400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:26798600-26799400	Enhancers	NHDF-Ad	bronchial
8	chr11:26798600-26799600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:26798600-26799600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:26798600-26799600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:26798600-26799800	Enhancers	Fetal Stomach	stomach
12	chr11:26798600-26800200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:26798600-26800200	Enhancers	Rectal Smooth Muscle	rectum
14	chr11:26798600-26801000	Enhancers	Fetal Kidney	kidney
15	chr11:26798600-26801800	Enhancers	Fetal Muscle Leg	muscle
16	chr11:26798800-26799200	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr11:26798800-26799200	Enhancers	NHLF	lung
18	chr11:26798800-26799200	Enhancers	Osteobl	bone
19	chr11:26798800-26799400	Enhancers	Fetal Lung	lung
20	chr11:26798800-26799800	Enhancers	Adipose Nuclei	Adipose
21	chr11:26798800-26800400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:26799000-26800200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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