Variant report

Variant	rs6484667
Chromosome Location	chr11:33800910-33800911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:33800708-33801023	IMR90	lung:	n/a	chr11:33800850-33800861 chr11:33800850-33800863 chr11:33800850-33800863
2	CEBPB	chr11:33800688-33801002	HepG2	liver:	n/a	chr11:33800850-33800861 chr11:33800850-33800863 chr11:33800850-33800863
3	CEBPB	chr11:33800724-33800982	Hela-S3	cervix:	n/a	chr11:33800850-33800861 chr11:33800850-33800863 chr11:33800850-33800863
4	GATA3	chr11:33800120-33800919	SK-N-SH	brain:	n/a	chr11:33800543-33800554 chr11:33800903-33800910 chr11:33800903-33800910 chr11:33800903-33800910 chr11:33800902-33800912 chr11:33800403-33800416
5	CEBPB	chr11:33800733-33801003	K562	blood:	n/a	chr11:33800850-33800861 chr11:33800850-33800863 chr11:33800850-33800863
6	CEBPB	chr11:33800715-33800982	H1-hESC	embryonic stem cell:	n/a	chr11:33800850-33800861 chr11:33800850-33800863 chr11:33800850-33800863

No.	Distal block	Cell Line	Cell type
1	chr11:33795039..33797877-chr11:33799009..33801476,4	K562	blood:
2	chr11:33800180..33801974-chr11:33802206..33805134,2	K562	blood:
3	chr11:33796653..33798601-chr11:33799418..33801172,2	MCF-7	breast:
4	chr11:33795039..33797911-chr11:33799630..33801680,2	K562	blood:
5	chr11:33765991..33768760-chr11:33799223..33801233,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC132216.1-3	chr11:33800709-33801041	ENSG00000255272.1

Variant related genes	Relation type
FBXO3	TF binding region
ENSG00000255272	Chromatin interaction
ENSG00000254508	Chromatin interaction
ENSG00000110429	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11032352	1.00[AMR][1000 genomes]
rs11032353	1.00[AMR][1000 genomes]
rs11032364	1.00[AMR][1000 genomes]
rs11032365	1.00[AMR][1000 genomes]
rs12277320	1.00[AMR][1000 genomes]
rs3181271	1.00[AMR][1000 genomes]
rs3181278	1.00[AMR][1000 genomes]
rs3181284	1.00[AMR][1000 genomes]
rs3181285	1.00[AMR][1000 genomes]
rs4237654	0.93[AFR][1000 genomes]
rs4237657	1.00[AFR][1000 genomes]
rs4237658	0.88[AFR][1000 genomes]
rs4285849	1.00[AMR][1000 genomes]
rs4315040	0.88[AFR][1000 genomes]
rs4366459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4414193	1.00[AMR][1000 genomes]
rs4623876	1.00[AMR][1000 genomes]
rs4635051	0.91[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4755342	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4756019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5002597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6484668	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7115881	1.00[AMR][1000 genomes]
rs7479064	1.00[AMR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
2	chr11:33797200-33801600	Weak transcription	Ovary	ovary
3	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:33798400-33802000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:33799400-33801800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:33799400-33802000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr11:33799600-33801400	Enhancers	HSMMtube	muscle
9	chr11:33799600-33801400	Enhancers	Osteobl	bone
10	chr11:33799600-33801800	Enhancers	Fetal Heart	heart
11	chr11:33799600-33802000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:33799600-33802200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:33799600-33802200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:33799600-33802200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:33799600-33802400	Enhancers	NHLF	lung
16	chr11:33799800-33801200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:33799800-33801200	Enhancers	Fetal Brain Male	brain
18	chr11:33799800-33801400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:33799800-33801600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:33799800-33801800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:33799800-33802000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:33799800-33802000	Enhancers	NHDF-Ad	bronchial
23	chr11:33799800-33802200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:33799800-33802400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:33799800-33802400	Enhancers	HSMM	muscle
26	chr11:33799800-33802800	Enhancers	Left Ventricle	heart
27	chr11:33800000-33801200	Bivalent Enhancer	Fetal Intestine Small	intestine
28	chr11:33800000-33802400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:33800000-33802400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr11:33800400-33801200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:33800400-33801200	Enhancers	NH-A	brain
32	chr11:33800400-33801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:33800400-33801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:33800400-33801400	Weak transcription	Right Atrium	heart
35	chr11:33800400-33801600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:33800400-33801600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr11:33800400-33801600	Enhancers	Fetal Stomach	stomach
38	chr11:33800600-33801000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:33800600-33801000	Enhancers	Brain Germinal Matrix	brain
40	chr11:33800600-33802000	Enhancers	Fetal Lung	lung
41	chr11:33800600-33802200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:33800600-33802400	Enhancers	Fetal Muscle Leg	muscle
43	chr11:33800800-33801000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:33800800-33801200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:33800800-33801200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:33800800-33801200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:33800800-33801800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:33800800-33801800	Enhancers	Placenta Amnion	Placenta Amnion

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