Variant report

Variant	rs6484737
Chromosome Location	chr11:34857579-34857580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1039841	0.85[EUR][1000 genomes]
rs10501136	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10836315	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11600239	0.83[EUR][1000 genomes]
rs11601846	0.97[ASN][1000 genomes]
rs11602870	0.93[EUR][1000 genomes]
rs11602886	0.92[EUR][1000 genomes]
rs11603640	0.85[EUR][1000 genomes]
rs11603751	0.83[EUR][1000 genomes]
rs11605381	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11606257	0.84[ASN][1000 genomes]
rs12272777	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12278295	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12291580	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12293044	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12791769	0.85[EUR][1000 genomes]
rs12793173	0.85[EUR][1000 genomes]
rs12794294	0.84[EUR][1000 genomes]
rs12803664	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12808574	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1594425	0.85[EUR][1000 genomes]
rs1594426	0.85[EUR][1000 genomes]
rs1897203	0.82[EUR][1000 genomes]
rs1949048	0.90[EUR][1000 genomes]
rs2421741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421742	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34026463	0.93[EUR][1000 genomes]
rs34136526	0.83[EUR][1000 genomes]
rs34191151	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34199375	0.84[ASN][1000 genomes]
rs34878924	0.93[EUR][1000 genomes]
rs34999475	0.83[EUR][1000 genomes]
rs35264793	0.85[EUR][1000 genomes]
rs35617374	0.85[EUR][1000 genomes]
rs35712504	0.83[EUR][1000 genomes]
rs35833762	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35953213	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4351790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593984	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60625165	0.80[ASN][1000 genomes]
rs61881094	0.81[EUR][1000 genomes]
rs61881097	0.82[EUR][1000 genomes]
rs61881103	0.93[EUR][1000 genomes]
rs61881104	0.93[EUR][1000 genomes]
rs61881107	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6484736	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106579	0.85[EUR][1000 genomes]
rs7128804	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131074	0.93[EUR][1000 genomes]
rs731726	0.97[ASN][1000 genomes]
rs731727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745377	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:34852000-34858200	Weak transcription	HepG2	liver
3	chr11:34852600-34858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34853200-34858400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:34855800-34858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:34856000-34858000	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links