Variant report

Variant	rs745377
Chromosome Location	chr11:34858413-34858414
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11601846	0.87[ASN][1000 genomes]
rs11606257	0.87[ASN][1000 genomes]
rs2421741	0.90[ASN][1000 genomes]
rs2421742	0.90[ASN][1000 genomes]
rs34199375	0.87[ASN][1000 genomes]
rs4351790	0.90[ASN][1000 genomes]
rs4593984	0.90[ASN][1000 genomes]
rs60625165	0.83[ASN][1000 genomes]
rs6484736	0.90[ASN][1000 genomes]
rs6484737	0.90[ASN][1000 genomes]
rs7128804	0.90[ASN][1000 genomes]
rs731726	0.87[ASN][1000 genomes]
rs731727	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs745377	APIP	cis	Esophagus Muscularis	GTEx
rs745377	APIP	cis	Nerve Tibial	GTEx
rs745377	APIP	cis	Heart Left Ventricle	GTEx
rs745377	APIP	cis	Skin Sun Exposed Lower leg	GTEx
rs745377	APIP	cis	lung	GTEx
rs745377	APIP	cis	Thyroid	GTEx
rs745377	PDHX	Cis_1M	lymphoblastoid	RTeQTL
rs745377	APIP	cis	Artery Tibial	GTEx
rs745377	APIP	cis	Artery Aorta	GTEx
rs745377	LOC728766///PRDM15	trans	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34855800-34858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34858000-34859200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:34858000-34861200	Enhancers	Esophagus	oesophagus
4	chr11:34858200-34858600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:34858200-34858800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:34858200-34858800	Enhancers	NHEK	skin
7	chr11:34858200-34859000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:34858200-34860800	Enhancers	HepG2	liver
9	chr11:34858400-34858600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:34858400-34859200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:34858400-34859200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:34858400-34859600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:34858400-34859600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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