Variant report

Variant	rs6488436
Chromosome Location	chr12:11770426-11770427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10772491	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10772492	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845390	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845391	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054377	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11054378	0.80[EUR][1000 genomes]
rs11054379	0.80[EUR][1000 genomes]
rs11054384	0.80[EUR][1000 genomes]
rs11054385	0.80[EUR][1000 genomes]
rs11833870	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11835584	0.80[EUR][1000 genomes]
rs12368746	0.80[EUR][1000 genomes]
rs12371924	0.80[EUR][1000 genomes]
rs4763712	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58419583	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58572989	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60345208	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488434	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488440	0.80[EUR][1000 genomes]
rs7132693	0.80[EUR][1000 genomes]
rs7133901	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7962768	0.80[EUR][1000 genomes]
rs9668837	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9669330	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470267	chr12:11767406-11787989	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11760800-11775600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:11763000-11771400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:11763000-11773400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:11766000-11770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:11766000-11774800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:11766200-11771400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:11767600-11773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:11768800-11771200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:11768800-11774800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:11769000-11771400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:11769000-11775400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:11769000-11775400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:11770000-11770600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr12:11770000-11770800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:11770000-11770800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:11770000-11772000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr12:11770000-11772000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr12:11770200-11776000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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