Variant report

Variant	rs6489813
Chromosome Location	chr12:121920393-121920394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121904480..121906372-chr12:121919407..121922126,2	MCF-7	breast:
2	chr12:121916723..121919363-chr12:121919909..121923756,5	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10849892	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065589	0.82[AMR][1000 genomes]
rs4980995	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7977709	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9795600	0.89[AMR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121906000-121921400	Weak transcription	Thymus	Thymus
3	chr12:121906000-121927400	Weak transcription	Lung	lung
4	chr12:121906000-121927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:121906000-121927600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
7	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
8	chr12:121906200-121920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:121906200-121922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:121906200-121927400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:121906200-121927600	Weak transcription	Spleen	Spleen
12	chr12:121906200-121928200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr12:121906400-121920400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:121906400-121921400	Weak transcription	Fetal Brain Male	brain
16	chr12:121906400-121921600	Weak transcription	Primary T cells from cord blood	blood
17	chr12:121906400-121927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:121906400-121929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:121906600-121921000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr12:121906600-121927400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:121906600-121927600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr12:121906600-121927600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr12:121906600-121927600	Weak transcription	Fetal Brain Female	brain
27	chr12:121906600-121928000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
29	chr12:121908400-121927600	Weak transcription	Primary B cells from cord blood	blood
30	chr12:121908400-121928000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr12:121908600-121920600	Weak transcription	Fetal Muscle Leg	muscle
32	chr12:121908600-121927600	Weak transcription	Brain Hippocampus Middle	brain
33	chr12:121908800-121931400	Weak transcription	Fetal Lung	lung
34	chr12:121909200-121920600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:121909600-121920400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr12:121909600-121927600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr12:121909800-121922000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr12:121910400-121920400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr12:121910600-121928600	Weak transcription	Fetal Kidney	kidney
40	chr12:121911000-121921600	Weak transcription	HepG2	liver
41	chr12:121911000-121927600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
43	chr12:121913000-121938000	Weak transcription	Brain Angular Gyrus	brain
44	chr12:121914200-121920400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr12:121914800-121922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr12:121915000-121920600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr12:121915000-121921000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr12:121915000-121924400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr12:121915000-121925000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:121915000-121927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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