Variant report

Variant	rs7977709
Chromosome Location	chr12:121921690-121921691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121904480..121906372-chr12:121919407..121922126,2	MCF-7	breast:
2	chr12:121921311..121923550-chr12:121924729..121927244,2	MCF-7	breast:
3	chr12:121916723..121919363-chr12:121919909..121923756,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10744762	0.80[MEX][hapmap]
rs10774592	0.80[JPT][hapmap]
rs10849886	0.92[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10849890	0.90[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs10849892	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10849893	0.80[EUR][1000 genomes]
rs4980995	0.85[EUR][1000 genomes]
rs6489811	0.90[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs6489812	0.87[CEU][hapmap]
rs6489813	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7134248	0.94[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs7296507	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs7980819	0.95[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.84[ASN][1000 genomes]
rs889970	0.87[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7977709	TAOK3	cis	parietal	SCAN
rs7977709	CLIP1	cis	parietal	SCAN
rs7977709	DYNLL1	cis	parietal	SCAN
rs7977709	MLXIP	cis	parietal	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121906000-121927400	Weak transcription	Lung	lung
3	chr12:121906000-121927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:121906000-121927600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
6	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
7	chr12:121906200-121922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr12:121906200-121927400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:121906200-121927600	Weak transcription	Spleen	Spleen
10	chr12:121906200-121928200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr12:121906400-121927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:121906400-121929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:121906600-121927400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:121906600-121927600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr12:121906600-121927600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr12:121906600-121927600	Weak transcription	Fetal Brain Female	brain
21	chr12:121906600-121928000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
23	chr12:121908400-121927600	Weak transcription	Primary B cells from cord blood	blood
24	chr12:121908400-121928000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr12:121908600-121927600	Weak transcription	Brain Hippocampus Middle	brain
26	chr12:121908800-121931400	Weak transcription	Fetal Lung	lung
27	chr12:121909600-121927600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:121909800-121922000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr12:121910600-121928600	Weak transcription	Fetal Kidney	kidney
30	chr12:121911000-121927600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
32	chr12:121913000-121938000	Weak transcription	Brain Angular Gyrus	brain
33	chr12:121914800-121922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr12:121915000-121924400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr12:121915000-121925000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:121915000-121927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr12:121915000-121928400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:121915000-121938000	Weak transcription	Osteobl	bone
39	chr12:121915800-121928600	Weak transcription	Fetal Intestine Large	intestine
40	chr12:121916200-121927400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr12:121916600-121923400	Strong transcription	Fetal Intestine Small	intestine
42	chr12:121916800-121925200	Weak transcription	Placenta	Placenta
43	chr12:121916800-121927400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr12:121917000-121927400	Weak transcription	Gastric	stomach
45	chr12:121918000-121927800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr12:121918000-121928000	Weak transcription	Hela-S3	cervix
47	chr12:121918200-121927800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr12:121918200-121938000	Weak transcription	Colon Smooth Muscle	Colon
49	chr12:121918400-121928000	Weak transcription	Esophagus	oesophagus
50	chr12:121918600-121927600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links