Variant report

Variant	rs10849886
Chromosome Location	chr12:121886921-121886922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121788084..121790903-chr12:121885930..121887494,2	K562	blood:
2	chr12:121878313..121883290-chr12:121886772..121892641,6	MCF-7	breast:
3	chr12:121884514..121887662-chr12:121903077..121905213,3	MCF-7	breast:
4	chr12:121886391..121888457-chr12:121900552..121903367,3	K562	blood:
5	chr12:121862237..121863932-chr12:121885168..121888064,2	K562	blood:
6	chr12:121733307..121735735-chr12:121886549..121888166,2	K562	blood:
7	chr12:121881960..121883716-chr12:121885028..121886945,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction
ENSG00000110931	Chromatin interaction
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10444490	0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10744762	0.93[CEU][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10774592	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10774593	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849876	0.83[EUR][1000 genomes]
rs10849883	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849888	0.85[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs10849890	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11065564	0.90[YRI][hapmap]
rs11065566	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065569	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11832924	0.89[YRI][hapmap]
rs12579582	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12582182	0.85[AMR][1000 genomes]
rs13754	0.90[YRI][hapmap]
rs2293462	0.90[YRI][hapmap]
rs3751134	0.90[YRI][hapmap]
rs4640009	0.90[YRI][hapmap]
rs61955091	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6489811	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7134248	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7296507	0.96[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7302836	0.81[EUR][1000 genomes]
rs7311543	0.90[YRI][hapmap]
rs7961855	0.92[CEU][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7962128	0.83[EUR][1000 genomes]
rs7962143	0.96[CEU][hapmap];0.80[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7974072	0.89[YRI][hapmap]
rs7976840	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7977709	0.92[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7980819	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8462	0.90[YRI][hapmap]
rs889970	0.96[CEU][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10849886	TMEM120B	cis	cerebellum	SCAN
rs10849886	CLIP1	cis	parietal	SCAN
rs10849886	B3GNT4	cis	cerebellum	SCAN
rs10849886	TAOK3	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121850400-121887400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:121851800-121891400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
4	chr12:121864000-121889200	Strong transcription	Fetal Intestine Small	intestine
5	chr12:121864600-121887200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:121867600-121890000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:121868000-121893600	Weak transcription	Psoas Muscle	Psoas
8	chr12:121874000-121889600	Weak transcription	HMEC	breast
9	chr12:121875200-121889800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:121875200-121889800	Weak transcription	HUVEC	blood vessel
11	chr12:121875600-121889200	Strong transcription	Fetal Thymus	thymus
12	chr12:121876800-121887400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:121877800-121889800	Weak transcription	NHDF-Ad	bronchial
14	chr12:121878600-121888800	Weak transcription	K562	blood
15	chr12:121878600-121889000	Weak transcription	Fetal Kidney	kidney
16	chr12:121879200-121892400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr12:121879200-121898600	Weak transcription	HSMMtube	muscle
18	chr12:121879200-121903400	Weak transcription	Hela-S3	cervix
19	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
20	chr12:121879400-121888000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr12:121879800-121889600	Weak transcription	Osteobl	bone
22	chr12:121879800-121889800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr12:121880000-121889400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr12:121880000-121903600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
26	chr12:121880200-121889200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr12:121880600-121889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:121880800-121889800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr12:121880800-121902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr12:121881000-121889800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr12:121881200-121887000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr12:121881800-121903400	Weak transcription	A549	lung
33	chr12:121882200-121889200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr12:121882400-121889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr12:121882400-121889600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr12:121882400-121890600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr12:121882600-121888600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr12:121882600-121889400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr12:121882600-121889600	Weak transcription	Colon Smooth Muscle	Colon
40	chr12:121882600-121890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr12:121882800-121888600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr12:121882800-121889800	Weak transcription	Fetal Lung	lung
43	chr12:121883000-121888800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr12:121883000-121889800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:121883000-121889800	Weak transcription	Colonic Mucosa	Colon
46	chr12:121883200-121888600	Weak transcription	Placenta	Placenta
47	chr12:121883200-121889800	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr12:121883200-121889800	Weak transcription	Esophagus	oesophagus
49	chr12:121883200-121889800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr12:121883200-121889800	Weak transcription	NHEK	skin

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