Variant report

Variant	rs10444490
Chromosome Location	chr12:121876385-121876386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121871414..121873881-chr12:121874979..121877789,2	MCF-7	breast:
2	chr12:121876229..121878073-chr12:121879480..121881227,2	MCF-7	breast:
3	chr12:121868417..121872600-chr12:121875201..121878428,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10744762	0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10774592	0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10774593	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10849872	0.81[AMR][1000 genomes]
rs10849874	0.83[EUR][1000 genomes]
rs10849876	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849883	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10849886	0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10849888	0.82[EUR][1000 genomes]
rs10849890	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11065564	0.83[YRI][hapmap]
rs11065566	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065569	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11832924	0.83[YRI][hapmap]
rs12579582	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13754	0.83[YRI][hapmap]
rs2293462	0.83[YRI][hapmap]
rs3751134	0.83[YRI][hapmap]
rs4640009	0.83[YRI][hapmap]
rs61955091	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6489811	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7134248	0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7296507	0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7302836	0.82[AMR][1000 genomes]
rs7311543	0.83[YRI][hapmap]
rs7961855	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7962128	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7962143	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7974072	0.83[YRI][hapmap]
rs7976840	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7980819	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8462	0.83[YRI][hapmap]
rs889970	0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121850400-121887400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:121851800-121891400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:121852200-121883200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:121852200-121884800	Strong transcription	Primary T cells from cord blood	blood
5	chr12:121852400-121881800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr12:121852600-121881600	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr12:121853000-121884800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:121853800-121880800	Strong transcription	Ovary	ovary
9	chr12:121853800-121880800	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr12:121853800-121881000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:121853800-121881000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:121854000-121880600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:121854000-121881400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:121854200-121881000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr12:121858600-121876800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
17	chr12:121861600-121877400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:121861600-121881000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr12:121863600-121880000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:121864000-121889200	Strong transcription	Fetal Intestine Small	intestine
21	chr12:121864200-121883600	Strong transcription	Spleen	Spleen
22	chr12:121864600-121887200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr12:121865000-121884000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr12:121867600-121890000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:121868000-121893600	Weak transcription	Psoas Muscle	Psoas
26	chr12:121868200-121881200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr12:121868600-121880000	Strong transcription	Stomach Smooth Muscle	stomach
28	chr12:121868800-121877800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr12:121869000-121876400	Weak transcription	Colonic Mucosa	Colon
30	chr12:121869600-121876400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr12:121869600-121878800	Weak transcription	Small Intestine	intestine
32	chr12:121869600-121886400	Weak transcription	Fetal Heart	heart
33	chr12:121870000-121879200	Strong transcription	HSMMtube	muscle
34	chr12:121871400-121876800	Weak transcription	Right Ventricle	heart
35	chr12:121871400-121879800	Weak transcription	Stomach Mucosa	stomach
36	chr12:121872600-121883400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:121873000-121879200	Strong transcription	Hela-S3	cervix
38	chr12:121873000-121880000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:121873000-121880600	Strong transcription	Fetal Lung	lung
40	chr12:121873000-121880800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr12:121873000-121881000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr12:121873000-121883800	Strong transcription	Liver	Liver
43	chr12:121873200-121879000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr12:121873200-121879800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr12:121873200-121880600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:121873200-121880800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr12:121873200-121880800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:121873200-121880800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr12:121873200-121883200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr12:121873400-121879000	Strong transcription	NH-A	brain

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