Variant report

Variant	rs11065566
Chromosome Location	chr12:121853373-121853374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:121853022-121853383	GM12892	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121853266..121855727-chr12:121903506..121905679,2	MCF-7	breast:
2	chr12:121844412..121847099-chr12:121852966..121855039,2	MCF-7	breast:
3	chr12:121836218..121840549-chr12:121849089..121854656,6	K562	blood:
4	chr12:121838349..121841070-chr12:121851218..121853535,3	MCF-7	breast:
5	chr12:121836218..121840549-chr12:121850932..121854656,4	K562	blood:
6	chr12:121844060..121846748-chr12:121851196..121853703,2	K562	blood:
7	chr12:121851621..121854706-chr12:121854783..121857476,4	K562	blood:
8	chr12:121850985..121853470-chr12:121904164..121905711,2	MCF-7	breast:
9	chr12:121825870..121828286-chr12:121850863..121853508,2	K562	blood:

No data

Variant related genes	Relation type
RNF34	TF binding region
ENSG00000170633	Chromatin interaction
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10444490	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10744761	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10744762	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774592	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10774593	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849872	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10849874	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849876	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10849883	0.85[EUR][1000 genomes]
rs10849886	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849890	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065569	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12579582	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1706459	0.83[EUR][1000 genomes]
rs61955091	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6489811	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7134248	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7296507	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7960545	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7961855	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7962143	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7976840	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7980819	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs889970	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121839000-121853800	Weak transcription	Ovary	ovary
2	chr12:121839000-121854800	Weak transcription	Gastric	stomach
3	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
4	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
5	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
6	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
7	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
11	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
14	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
16	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:121839600-121854800	Weak transcription	Stomach Mucosa	stomach
18	chr12:121839800-121855200	Weak transcription	Brain Angular Gyrus	brain
19	chr12:121840000-121855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:121840600-121855000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr12:121843000-121854800	Weak transcription	HUVEC	blood vessel
23	chr12:121843200-121853800	Weak transcription	Brain Anterior Caudate	brain
24	chr12:121843200-121855600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:121843400-121855200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:121843400-121855400	Weak transcription	Spleen	Spleen
27	chr12:121843600-121853800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr12:121843600-121853800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:121843600-121854800	Weak transcription	NHLF	lung
30	chr12:121844200-121853800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr12:121844400-121853600	Weak transcription	Adipose Nuclei	Adipose
32	chr12:121844400-121854800	Weak transcription	Fetal Kidney	kidney
33	chr12:121844600-121853800	Weak transcription	Brain Substantia Nigra	brain
34	chr12:121844600-121854000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:121844600-121855600	Weak transcription	Brain Hippocampus Middle	brain
36	chr12:121845000-121855400	Weak transcription	Colonic Mucosa	Colon
37	chr12:121845200-121854000	Weak transcription	Fetal Lung	lung
38	chr12:121845400-121853600	Weak transcription	HSMM	muscle
39	chr12:121845400-121853800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr12:121845400-121853800	Weak transcription	Brain Germinal Matrix	brain
41	chr12:121845400-121854000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr12:121845400-121854000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr12:121845400-121854000	Weak transcription	NHDF-Ad	bronchial
44	chr12:121845400-121854600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr12:121845800-121853600	Weak transcription	Left Ventricle	heart
46	chr12:121845800-121853800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:121845800-121853800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr12:121846000-121853400	Weak transcription	Osteobl	bone
49	chr12:121846400-121854200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:121846600-121854400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links