Variant report

Variant	rs7962143
Chromosome Location	chr12:121830033-121830034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121823951..121831575-chr12:121836455..121840985,9	K562	blood:
2	chr12:121789854..121791773-chr12:121828508..121830163,2	MCF-7	breast:
3	chr12:121828758..121833108-chr12:121835752..121839546,7	MCF-7	breast:
4	chr12:121789890..121792277-chr12:121828358..121830273,2	K562	blood:
5	chr12:121789890..121791597-chr12:121828770..121830273,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF34-1	chr12:121829773-121830215	XLOC_009914
2	lnc-RNF34-1	chr12:121829773-121830204	XLOC_009914
3	lnc-RNF34-1	chr12:121829772-121830215	NONHSAT031426

No data

Variant related genes	Relation type
ENSG00000170633	Chromatin interaction
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10444490	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10744761	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10744762	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10774592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774593	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849872	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10849874	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849876	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849883	0.87[EUR][1000 genomes]
rs10849886	0.96[CEU][hapmap];0.80[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849888	0.81[CEU][hapmap]
rs10849890	0.96[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11065566	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065569	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12579582	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1706459	0.85[EUR][1000 genomes]
rs61955091	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6489811	0.96[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134248	0.96[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7296507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7960545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7961855	0.96[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7976840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980819	0.96[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs889970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121826600-121831400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121826600-121836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:121826800-121836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:121826800-121836400	Weak transcription	Brain Anterior Caudate	brain
5	chr12:121826800-121836400	Weak transcription	HepG2	liver
6	chr12:121829400-121830200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:121829400-121830200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:121829400-121830200	Active TSS	NHDF-Ad	bronchial
9	chr12:121829400-121830400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr12:121829400-121830400	Enhancers	Primary B cells from peripheral blood	blood
11	chr12:121829400-121830400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr12:121829400-121830400	Enhancers	Dnd41	blood
13	chr12:121829600-121830200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:121829600-121830200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:121829600-121830200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr12:121829600-121830200	Active TSS	Right Atrium	heart
17	chr12:121829600-121830200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr12:121829600-121830400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr12:121829600-121830400	Enhancers	Fetal Muscle Leg	muscle
20	chr12:121829600-121830400	Flanking Active TSS	GM12878-XiMat	blood
21	chr12:121829800-121830200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:121829800-121830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:121829800-121830200	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr12:121829800-121830200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr12:121829800-121830200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr12:121829800-121830400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:121829800-121830400	Enhancers	Fetal Intestine Small	intestine
28	chr12:121830000-121830200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr12:121830000-121830200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr12:121830000-121830200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr12:121830000-121830200	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr12:121830000-121830200	Enhancers	NHLF	lung
33	chr12:121830000-121830400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr12:121830000-121830400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr12:121830000-121830400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr12:121830000-121830400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr12:121830000-121830400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr12:121830000-121830400	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr12:121830000-121830400	Enhancers	Fetal Stomach	stomach
40	chr12:121830000-121830400	Enhancers	K562	blood
41	chr12:121830000-121836400	Weak transcription	Fetal Lung	lung
42	chr12:121830000-121836400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr12:121830000-121836600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr12:121830000-121836600	Weak transcription	NHEK	skin
45	chr12:121830000-121836800	Weak transcription	Psoas Muscle	Psoas
46	chr12:121830000-121836800	Weak transcription	Thymus	Thymus
47	chr12:121830000-121837000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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