Variant report

Variant	rs10849876
Chromosome Location	chr12:121836105-121836106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121829703..121831328-chr12:121835909..121837588,2	MCF-7	breast:
2	chr12:121788188..121792674-chr12:121835209..121840455,13	MCF-7	breast:
3	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
4	chr12:121821219..121823980-chr12:121834269..121836730,2	K562	blood:
5	chr12:121828758..121833108-chr12:121835752..121839546,7	MCF-7	breast:
6	chr12:121788153..121793367-chr12:121835114..121840699,18	MCF-7	breast:
7	chr12:121833538..121836649-chr12:121837413..121839673,4	K562	blood:
8	chr12:121786049..121792349-chr12:121835999..121841368,18	K562	blood:
9	chr12:121835704..121841982-chr12:121855433..121861253,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258435	Chromatin interaction
ENSG00000089053	Chromatin interaction
ENSG00000170633	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10444490	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10744761	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10744762	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10774592	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10774593	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849872	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10849874	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10849883	0.81[EUR][1000 genomes]
rs10849886	0.83[EUR][1000 genomes]
rs10849890	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11065566	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11065569	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12579582	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61955091	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6489811	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7134248	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7296507	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7960545	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7961855	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7962143	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7976840	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7980819	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs889970	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121826600-121836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:121826800-121836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:121826800-121836400	Weak transcription	Brain Anterior Caudate	brain
4	chr12:121826800-121836400	Weak transcription	HepG2	liver
5	chr12:121830000-121836400	Weak transcription	Fetal Lung	lung
6	chr12:121830000-121836400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:121830000-121836600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:121830000-121836600	Weak transcription	NHEK	skin
9	chr12:121830000-121836800	Weak transcription	Psoas Muscle	Psoas
10	chr12:121830000-121836800	Weak transcription	Thymus	Thymus
11	chr12:121830000-121837000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr12:121830200-121836200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:121830200-121836600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:121830400-121836200	Weak transcription	Dnd41	blood
15	chr12:121830400-121836200	Weak transcription	K562	blood
16	chr12:121830400-121836600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr12:121830400-121836600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr12:121830400-121836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:121831600-121836800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:121834200-121836600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr12:121834600-121836600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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