Variant report

Variant	rs10849872
Chromosome Location	chr12:121827319-121827320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121823951..121831575-chr12:121836455..121840985,9	K562	blood:
2	chr12:121825870..121828286-chr12:121850863..121853508,2	K562	blood:
3	chr12:121826097..121827677-chr12:121838078..121840694,2	MCF-7	breast:
4	chr12:121772938..121775701-chr12:121825354..121827849,2	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction
ENSG00000170633	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10444490	0.81[AMR][1000 genomes]
rs10744761	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10744762	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10774592	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10774593	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10849874	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849876	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11065566	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11065569	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61955091	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7296507	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7960545	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7961855	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7962143	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7976840	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs889970	0.83[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121825000-121829400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:121826000-121828600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:121826600-121831400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:121826600-121836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:121826800-121829400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:121826800-121829400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:121826800-121829400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:121826800-121829400	Weak transcription	NHDF-Ad	bronchial
9	chr12:121826800-121829600	Weak transcription	K562	blood
10	chr12:121826800-121829600	Weak transcription	NHLF	lung
11	chr12:121826800-121830000	Enhancers	NHEK	skin
12	chr12:121826800-121836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:121826800-121836400	Weak transcription	Brain Anterior Caudate	brain
14	chr12:121826800-121836400	Weak transcription	HepG2	liver
15	chr12:121827000-121828200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:121827000-121828400	Weak transcription	HMEC	breast
17	chr12:121827000-121829400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:121827000-121829400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:121827000-121829400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:121827200-121829400	Weak transcription	Primary monocytes fromperipheralblood	blood

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