Variant report

Variant	rs7962128
Chromosome Location	chr12:121907336-121907337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121904155..121907527-chr12:121908588..121911901,5	K562	blood:
2	chr12:121904500..121907610-chr12:122092139..122094849,3	K562	blood:
3	chr12:121902658..121907568-chr12:122239086..122242306,5	K562	blood:
4	chr12:121902246..121907496-chr12:121907780..121909749,6	MCF-7	breast:
5	chr12:121903708..121907527-chr12:121909090..121912019,3	K562	blood:
6	chr12:121905323..121907586-chr12:121967000..121969065,2	MCF-7	breast:
7	chr12:121902658..121907689-chr12:122234728..122241054,9	K562	blood:
8	chr12:121906006..121907893-chr12:121944276..121946845,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272849	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000139718	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10444490	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10849883	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849886	0.83[EUR][1000 genomes]
rs10849888	0.81[EUR][1000 genomes]
rs10849890	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11065569	0.84[AMR][1000 genomes]
rs12579582	0.84[AMR][1000 genomes]
rs1706459	0.93[ASN][1000 genomes]
rs6489811	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7134248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7302836	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7980819	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121906000-121907400	Weak transcription	Placenta	Placenta
3	chr12:121906000-121907800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:121906000-121908800	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:121906000-121909200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:121906000-121910000	Weak transcription	Liver	Liver
7	chr12:121906000-121910800	Weak transcription	Pancreas	Pancrea
8	chr12:121906000-121916600	Weak transcription	Gastric	stomach
9	chr12:121906000-121921400	Weak transcription	Thymus	Thymus
10	chr12:121906000-121927400	Weak transcription	Lung	lung
11	chr12:121906000-121927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr12:121906000-121927600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
14	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
15	chr12:121906200-121908000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:121906200-121912000	Weak transcription	Fetal Intestine Small	intestine
17	chr12:121906200-121914000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:121906200-121914600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr12:121906200-121914600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr12:121906200-121919800	Weak transcription	Fetal Thymus	thymus
21	chr12:121906200-121920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:121906200-121922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr12:121906200-121927400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr12:121906200-121927600	Weak transcription	Spleen	Spleen
25	chr12:121906200-121928200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr12:121906400-121907600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr12:121906400-121908200	Weak transcription	Colonic Mucosa	Colon
29	chr12:121906400-121908400	Weak transcription	Fetal Lung	lung
30	chr12:121906400-121909200	Weak transcription	K562	blood
31	chr12:121906400-121910200	Weak transcription	Fetal Kidney	kidney
32	chr12:121906400-121910200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr12:121906400-121912000	Weak transcription	Fetal Stomach	stomach
34	chr12:121906400-121912600	Weak transcription	Dnd41	blood
35	chr12:121906400-121914400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr12:121906400-121917600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:121906400-121917800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr12:121906400-121919000	Weak transcription	GM12878-XiMat	blood
39	chr12:121906400-121920400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr12:121906400-121921400	Weak transcription	Fetal Brain Male	brain
41	chr12:121906400-121921600	Weak transcription	Primary T cells from cord blood	blood
42	chr12:121906400-121927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr12:121906400-121929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:121906600-121907600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr12:121906600-121907800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr12:121906600-121908200	Weak transcription	Brain Hippocampus Middle	brain
50	chr12:121906600-121908400	Enhancers	Primary B cells from cord blood	blood

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