Variant report

Variant	rs7974072
Chromosome Location	chr12:121826015-121826016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr12:121826013-121826733	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121824400..121827270-chr12:121834076..121835792,2	K562	blood:
2	chr12:121823951..121831575-chr12:121836455..121840985,9	K562	blood:
3	chr12:121787265..121790131-chr12:121824018..121826806,2	MCF-7	breast:
4	chr12:121825870..121828286-chr12:121850863..121853508,2	K562	blood:
5	chr12:121824215..121826693-chr12:121836702..121839639,3	K562	blood:
6	chr12:121772938..121775701-chr12:121825354..121827849,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10444490	0.83[YRI][hapmap]
rs10849886	0.89[YRI][hapmap]
rs11065564	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1138515	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs11832924	0.94[ASW][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12300459	0.81[TSI][hapmap]
rs13754	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs15876	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2293462	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2293463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3751134	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4640009	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7311543	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7316418	0.82[YRI][hapmap]
rs8462	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7974072	RNF34	cis	multi-tissue	Pritchard
rs7974072	NOS1	cis	parietal	SCAN
rs7974072	RNF10	cis	cerebellum	SCAN
rs7974072	HNF1A	cis	cerebellum	SCAN
rs7974072	GCN1L1	cis	cerebellum	SCAN
rs7974072	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121825000-121829400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:121825600-121826200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:121825600-121826800	Enhancers	K562	blood
4	chr12:121825600-121827000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:121825600-121827000	Enhancers	HMEC	breast
6	chr12:121825600-121827200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:121825800-121826400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr12:121825800-121826800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:121825800-121826800	Enhancers	HepG2	liver
10	chr12:121826000-121826400	Enhancers	NHEK	skin
11	chr12:121826000-121826600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:121826000-121826800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:121826000-121827000	Enhancers	HUVEC	blood vessel
14	chr12:121826000-121828600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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