Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118022633..118025117-chr12:118025734..118027901,2	MCF-7	breast:
2	chr12:117652926..117655483-chr12:118025370..118027295,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10774936	0.91[EUR][1000 genomes]
rs10774937	0.91[EUR][1000 genomes]
rs10774938	0.88[ASN][1000 genomes]
rs10850846	0.91[EUR][1000 genomes]
rs10850847	0.91[EUR][1000 genomes]
rs10850848	0.93[EUR][1000 genomes]
rs10850849	0.92[ASN][1000 genomes]
rs10850850	0.92[ASN][1000 genomes]
rs10850851	0.91[EUR][1000 genomes]
rs10850854	0.92[EUR][1000 genomes]
rs10850855	0.91[EUR][1000 genomes]
rs11068555	0.88[ASN][1000 genomes]
rs11068557	0.96[ASN][1000 genomes]
rs11068558	0.92[ASN][1000 genomes]
rs11068563	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11068565	0.91[EUR][1000 genomes]
rs12308267	0.89[EUR][1000 genomes]
rs12369419	0.90[EUR][1000 genomes]
rs61938965	0.91[EUR][1000 genomes]
rs7132400	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7956575	0.86[ASN][1000 genomes]
rs7970894	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118021800-118036800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118025400-118030800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:118025600-118027000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:118025600-118030800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:118025600-118030800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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