Variant report

Variant	rs7956575
Chromosome Location	chr12:118029449-118029450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10774938	0.98[ASN][1000 genomes]
rs10774940	0.90[EUR][1000 genomes]
rs10850849	0.94[ASN][1000 genomes]
rs10850850	0.94[ASN][1000 genomes]
rs11068555	0.81[ASN][1000 genomes]
rs11068557	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11068558	0.94[ASN][1000 genomes]
rs11068563	0.92[ASN][1000 genomes]
rs1400589	0.90[EUR][1000 genomes]
rs2063943	0.82[ASN][1000 genomes]
rs2650169	0.89[EUR][1000 genomes]
rs6490129	0.86[ASN][1000 genomes]
rs6490130	0.90[EUR][1000 genomes]
rs6490131	0.90[EUR][1000 genomes]
rs708861	0.88[EUR][1000 genomes]
rs7970894	0.94[ASN][1000 genomes]
rs816195	0.89[EUR][1000 genomes]
rs860113	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7956575	SDSL	cis	parietal	SCAN
rs7956575	NIP30	trans	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118021800-118036800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118025400-118030800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:118025600-118030800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:118025600-118030800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:118029200-118029600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:118029400-118030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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