Variant report

Variant	rs6492712
Chromosome Location	chr13:95201276-95201277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:249132382..249133235-chr13:95200903..95201419,2	Hela-S3	cervix:
2	chr13:95188685..95191659-chr13:95200343..95202520,3	K562	blood:
3	chr13:95200950..95203234-chr13:95251840..95253410,2	MCF-7	breast:
4	chr13:95200940..95202785-chr13:95248237..95249753,2	MCF-7	breast:
5	chr13:95201195..95202043-chr8:134584450..134585018,2	Hela-S3	cervix:
6	chr12:46121170..46122152-chr13:95200686..95201507,2	Hela-S3	cervix:
7	chr13:95189667..95191173-chr13:95200672..95202782,2	MCF-7	breast:
8	chr13:95201215..95201873-chr8:67834925..67835805,2	NB4	blood:
9	chr13:95200681..95202256-chr13:95253004..95255314,2	K562	blood:
10	chr13:95200681..95202448-chr13:95253004..95255779,2	K562	blood:
11	chr13:95201188..95204136-chr13:95209165..95210804,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TGDS-1	chr13:95200354-95201818	NONHSAT034727

No data

Variant related genes	Relation type
ENSG00000088451	Chromatin interaction
ENSG00000171161	Chromatin interaction
ENSG00000152749	Chromatin interaction
ENSG00000273015	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7326503	1.00[CEU][hapmap]
rs7988845	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3519385	chr13:95196826-95201400	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3519397	chr13:95196826-95201400	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95200400-95201400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:95200400-95201600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:95200400-95201800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr13:95200400-95202200	Flanking Active TSS	Dnd41	blood
5	chr13:95200400-95202400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr13:95200400-95203000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95200400-95203000	Active TSS	Fetal Kidney	kidney
8	chr13:95200400-95203000	Active TSS	Right Ventricle	heart
9	chr13:95200400-95203200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:95200600-95201400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:95200600-95201400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr13:95200600-95201400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:95200600-95201400	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr13:95200600-95201400	Flanking Active TSS	HMEC	breast
15	chr13:95200600-95201800	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr13:95200600-95201800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr13:95200600-95202000	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr13:95200600-95202400	Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr13:95200600-95202800	Active TSS	Brain Cingulate Gyrus	brain
20	chr13:95200600-95203000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr13:95200600-95203000	Active TSS	Fetal Brain Female	brain
22	chr13:95200600-95203000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr13:95200800-95201400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr13:95200800-95201400	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr13:95200800-95201400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr13:95200800-95201400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:95200800-95201400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:95200800-95201400	Flanking Active TSS	Liver	Liver
29	chr13:95200800-95201400	Flanking Active TSS	Colonic Mucosa	Colon
30	chr13:95200800-95201400	Flanking Active TSS	Fetal Muscle Trunk	muscle
31	chr13:95200800-95201400	Flanking Active TSS	Placenta	Placenta
32	chr13:95200800-95201400	Flanking Active TSS	Fetal Thymus	thymus
33	chr13:95200800-95201400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr13:95200800-95201400	Flanking Active TSS	NH-A	brain
35	chr13:95200800-95201600	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr13:95200800-95201600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr13:95200800-95201600	Flanking Active TSS	HUVEC	blood vessel
38	chr13:95200800-95201800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr13:95200800-95202400	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr13:95200800-95202600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr13:95200800-95202600	Active TSS	Aorta	Aorta
42	chr13:95200800-95202600	Active TSS	A549	lung
43	chr13:95200800-95202600	Active TSS	K562	blood
44	chr13:95200800-95202600	Active TSS	NHDF-Ad	bronchial
45	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:95200800-95202800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr13:95200800-95202800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr13:95200800-95202800	Active TSS	Ovary	ovary
50	chr13:95200800-95202800	Active TSS	Psoas Muscle	Psoas

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