Variant report

Variant	rs7988845
Chromosome Location	chr13:95203621-95203622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95202114..95205197-chr13:95246302..95249578,3	K562	blood:
2	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:
3	chr13:95201512..95205109-chr13:95210516..95214213,3	MCF-7	breast:
4	chr13:95201188..95204136-chr13:95209165..95210804,2	K562	blood:

Variant related genes	Relation type
ENSG00000088451	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6492712	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95201800-95204400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:95202400-95208800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:95202600-95205200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:95202600-95221400	Weak transcription	Gastric	stomach
5	chr13:95202800-95203800	Weak transcription	Placenta	Placenta
6	chr13:95202800-95204400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:95202800-95204400	Weak transcription	Osteobl	bone
8	chr13:95202800-95205000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:95202800-95208000	Weak transcription	Adipose Nuclei	Adipose
10	chr13:95202800-95208200	Weak transcription	Brain Germinal Matrix	brain
11	chr13:95202800-95210400	Weak transcription	Thymus	Thymus
12	chr13:95202800-95221400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:95202800-95222000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:95202800-95223600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:95203000-95221200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr13:95203000-95221400	Weak transcription	Fetal Intestine Small	intestine
17	chr13:95203000-95222400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:95203200-95205600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:95203200-95220800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:95203200-95220800	Weak transcription	Fetal Intestine Large	intestine
21	chr13:95203200-95222200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr13:95203400-95222400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr13:95203400-95222600	Weak transcription	A549	lung

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