Variant report

Variant	rs6492734
Chromosome Location	chr13:95356732-95356733
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1555571	0.81[EUR][1000 genomes]
rs2050915	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2093688	0.91[ASN][1000 genomes]
rs7982376	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7989197	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561664	0.89[ASN][1000 genomes]
rs9561667	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9584245	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95353800-95358000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:95354000-95357800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr13:95354600-95356800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr13:95354600-95358600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr13:95354800-95357000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:95355200-95357000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
7	chr13:95355600-95356800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr13:95355800-95359600	Weak transcription	Pancreas	Pancrea
9	chr13:95356000-95356800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:95356000-95357000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr13:95356400-95357000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr13:95356400-95358600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:95356600-95356800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr13:95356600-95356800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:95356600-95357000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
16	chr13:95356600-95357600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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