Variant report

Variant	rs7982376
Chromosome Location	chr13:95367349-95367350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1535650	0.80[ASN][1000 genomes]
rs1555571	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050915	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs2253604	0.85[ASN][1000 genomes]
rs6492734	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7989197	0.81[CEU][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap]
rs9301991	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv826750	chr13:95358502-95368070	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1054343	chr13:95362727-95395486	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95359000-95368000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:95363600-95367800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95366400-95370200	Weak transcription	Esophagus	oesophagus
4	chr13:95366600-95367600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:95366600-95368800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:95366800-95368600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95366800-95368800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:95367000-95367400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr13:95367000-95368600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:95367200-95367400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr13:95367200-95367600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:95367200-95368400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr13:95367200-95368400	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links