Variant report

Variant	rs6492950
Chromosome Location	chr15:40805059-40805060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40802752..40805307-chr15:40819242..40820883,2	K562	blood:
2	chr15:40789702..40793899-chr15:40802454..40805435,6	K562	blood:
3	chr15:40797459..40799431-chr15:40802673..40805643,2	K562	blood:
4	chr15:40797354..40799146-chr15:40804664..40806260,2	MCF-7	breast:
5	chr15:40730812..40733256-chr15:40803333..40806622,3	K562	blood:
6	chr15:40762122..40764569-chr15:40802898..40805797,2	MCF-7	breast:
7	chr15:40730812..40737363-chr15:40801226..40806622,9	K562	blood:
8	chr15:40800305..40802269-chr15:40802285..40805070,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2470620	1.00[AMR][1000 genomes]
rs2470621	1.00[AMR][1000 genomes]
rs2959540	1.00[AMR][1000 genomes]
rs45511200	1.00[AMR][1000 genomes]
rs659443	1.00[AMR][1000 genomes]
rs670107	1.00[AMR][1000 genomes]
rs7178426	1.00[AMR][1000 genomes]
rs73309	1.00[AMR][1000 genomes]
rs930768	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40804200-40807600	Weak transcription	NHDF-Ad	bronchial
2	chr15:40804400-40805200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:40804400-40805200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:40804400-40805200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:40804400-40805200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr15:40804400-40805200	Enhancers	Placenta	Placenta
7	chr15:40804400-40805400	Enhancers	NHEK	skin
8	chr15:40804400-40812200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:40804400-40812200	Weak transcription	Pancreas	Pancrea
10	chr15:40804400-40821000	Weak transcription	Right Atrium	heart
11	chr15:40804800-40805800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:40804800-40806200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:40805000-40805200	Enhancers	Fetal Stomach	stomach
14	chr15:40805000-40805400	Weak transcription	K562	blood
15	chr15:40805000-40812200	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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