Variant report

Variant	rs659443
Chromosome Location	chr15:40753621-40753622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr15:40753165-40753636	PBDE	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:
2	chr15:40731258..40734131-chr15:40751966..40754614,2	MCF-7	breast:
3	chr15:40751111..40753930-chr15:40754038..40757377,4	K562	blood:
4	chr15:40751534..40754052-chr15:40756014..40757565,2	MCF-7	breast:

Variant related genes	Relation type
BAHD1	TF binding region
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2470620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2470621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2959540	1.00[AMR][1000 genomes]
rs6492950	1.00[AMR][1000 genomes]
rs670107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178426	1.00[AMR][1000 genomes]
rs73309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs930768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:40744200-40756400	Weak transcription	Fetal Kidney	kidney
3	chr15:40747400-40762600	Weak transcription	HUVEC	blood vessel
4	chr15:40748000-40757800	Weak transcription	NH-A	brain
5	chr15:40748200-40755400	Weak transcription	Fetal Lung	lung
6	chr15:40748200-40755600	Weak transcription	Osteobl	bone
7	chr15:40748200-40755800	Weak transcription	NHDF-Ad	bronchial
8	chr15:40748800-40757000	Weak transcription	A549	lung
9	chr15:40749000-40754000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:40749000-40757400	Weak transcription	HSMM	muscle
11	chr15:40749200-40754400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:40749200-40758200	Weak transcription	Stomach Mucosa	stomach
13	chr15:40749200-40762600	Weak transcription	Psoas Muscle	Psoas
14	chr15:40749200-40762800	Weak transcription	Small Intestine	intestine
15	chr15:40749400-40754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:40749400-40754600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:40749400-40754600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:40749400-40758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:40749400-40762200	Weak transcription	Fetal Heart	heart
20	chr15:40749400-40762400	Weak transcription	Right Atrium	heart
21	chr15:40749600-40757200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:40749600-40757800	Weak transcription	HMEC	breast
23	chr15:40749800-40756200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:40749800-40760800	Strong transcription	Spleen	Spleen
25	chr15:40749800-40762200	Weak transcription	Fetal Brain Male	brain
26	chr15:40750000-40761400	Strong transcription	Fetal Intestine Small	intestine
27	chr15:40750200-40759400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:40750200-40759600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:40750200-40759800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:40750200-40760800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:40750200-40761000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:40750400-40754800	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:40750400-40755200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:40750400-40756200	Strong transcription	Placenta	Placenta
35	chr15:40750400-40758400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr15:40750400-40758400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:40750400-40759600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr15:40750400-40759600	Strong transcription	Gastric	stomach
39	chr15:40750400-40759600	Strong transcription	Ovary	ovary
40	chr15:40750400-40759600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr15:40750400-40759600	Strong transcription	Dnd41	blood
42	chr15:40750400-40759800	Strong transcription	Brain Germinal Matrix	brain
43	chr15:40750400-40759800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr15:40750400-40759800	Strong transcription	Fetal Thymus	thymus
45	chr15:40750400-40760200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:40750400-40760600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:40750400-40761000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:40750400-40761000	Strong transcription	Fetal Stomach	stomach
49	chr15:40750400-40761200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:40750400-40761600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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