Variant report

Variant	rs6492978
Chromosome Location	chr15:41317702-41317703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41309360..41312229-chr15:41317584..41319591,2	K562	blood:
2	chr15:41310991..41312633-chr15:41317212..41318935,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11855248	0.85[ASN][1000 genomes]
rs12899590	0.85[ASN][1000 genomes]
rs12905926	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12910027	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13329511	0.85[ASN][1000 genomes]
rs2412572	0.80[ASN][1000 genomes]
rs28473405	0.84[ASN][1000 genomes]
rs28479904	0.85[ASN][1000 genomes]
rs28501589	0.85[ASN][1000 genomes]
rs28581803	0.81[ASN][1000 genomes]
rs2925342	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2925343	0.85[ASN][1000 genomes]
rs2925345	0.84[EUR][1000 genomes]
rs2925346	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2927061	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2927062	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3100807	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3101436	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3214068	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3986311	0.80[ASN][1000 genomes]
rs4497658	0.80[ASN][1000 genomes]
rs7162992	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7169375	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7171437	0.85[ASN][1000 genomes]
rs72737704	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41300200-41322400	Strong transcription	Primary T cells from cord blood	blood
5	chr15:41303200-41320200	Strong transcription	Hela-S3	cervix
6	chr15:41303400-41321800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:41303400-41323400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:41303600-41318000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:41304200-41318000	Weak transcription	Small Intestine	intestine
10	chr15:41304800-41322200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:41306000-41322200	Strong transcription	Fetal Thymus	thymus
12	chr15:41306800-41338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:41307600-41335000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:41308800-41331200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:41308800-41337000	Weak transcription	Colonic Mucosa	Colon
16	chr15:41309000-41339200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:41309400-41332600	Weak transcription	Gastric	stomach
18	chr15:41310000-41333200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:41310000-41333400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:41310200-41322400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr15:41311000-41319000	Weak transcription	Psoas Muscle	Psoas
22	chr15:41311000-41322200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr15:41311000-41328800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:41311200-41320000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr15:41311400-41335400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:41311800-41318400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:41312800-41318400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:41312800-41319000	Weak transcription	Spleen	Spleen
29	chr15:41313200-41319200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:41313400-41318600	Weak transcription	HUVEC	blood vessel
31	chr15:41313400-41318800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:41313400-41319000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:41313400-41319200	Weak transcription	Esophagus	oesophagus
34	chr15:41313400-41332800	Weak transcription	Brain Angular Gyrus	brain
35	chr15:41313400-41333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:41313400-41336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:41313400-41336200	Weak transcription	Brain Substantia Nigra	brain
38	chr15:41313600-41318600	Weak transcription	Brain Anterior Caudate	brain
39	chr15:41313800-41318800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:41314000-41319000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:41314000-41333000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:41314000-41335600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:41314200-41318600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:41314400-41318600	Weak transcription	Fetal Brain Female	brain
45	chr15:41314600-41318600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:41314600-41323800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:41314800-41331800	Weak transcription	Fetal Brain Male	brain
48	chr15:41315000-41318600	Weak transcription	HepG2	liver
49	chr15:41315000-41320400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:41315000-41322400	Strong transcription	Liver	Liver

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