Variant report

Variant	rs6493056
Chromosome Location	chr15:42913470-42913471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42898237..42899774-chr15:42911395..42914292,2	K562	blood:
2	chr15:42893466..42896264-chr15:42911429..42914221,2	K562	blood:
3	chr15:42893466..42896264-chr15:42911429..42914535,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12323990	1.00[MEX][hapmap]
rs12324135	0.81[JPT][hapmap]
rs12324838	1.00[JPT][hapmap]
rs12592573	1.00[MEX][hapmap]
rs12594696	1.00[MEX][hapmap]
rs12594765	1.00[MEX][hapmap]
rs12594858	1.00[JPT][hapmap]
rs16957037	1.00[MEX][hapmap]
rs16957043	0.81[JPT][hapmap]
rs16957061	1.00[MEX][hapmap]
rs16957063	1.00[MEX][hapmap]
rs3742995	1.00[MEX][hapmap]
rs4334272	1.00[MEX][hapmap]
rs60753136	0.96[ASN][1000 genomes]
rs6493055	0.88[ASN][1000 genomes]
rs7176832	1.00[MEX][hapmap]
rs8023743	0.81[JPT][hapmap]
rs8033336	1.00[MEX][hapmap]
rs8043143	0.81[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
2	chr15:42895200-42914200	Weak transcription	HepG2	liver
3	chr15:42895200-42920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:42897800-42914600	Weak transcription	Brain Germinal Matrix	brain
5	chr15:42897800-42930200	Weak transcription	HSMM	muscle
6	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
7	chr15:42898400-42932800	Weak transcription	Esophagus	oesophagus
8	chr15:42898600-42929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:42900600-42928000	Weak transcription	Placenta	Placenta
10	chr15:42900600-42930000	Weak transcription	HMEC	breast
11	chr15:42900800-42914600	Weak transcription	HUVEC	blood vessel
12	chr15:42900800-42929800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:42901000-42921200	Weak transcription	NHDF-Ad	bronchial
14	chr15:42901000-42927800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:42901400-42928400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:42901400-42929800	Weak transcription	Brain Angular Gyrus	brain
17	chr15:42901600-42927800	Weak transcription	Adipose Nuclei	Adipose
18	chr15:42901600-42930000	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:42901600-42930400	Weak transcription	Primary B cells from cord blood	blood
20	chr15:42903200-42931000	Weak transcription	Fetal Intestine Large	intestine
21	chr15:42904000-42930200	Weak transcription	Right Ventricle	heart
22	chr15:42904200-42929800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:42904400-42921200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:42904600-42930200	Weak transcription	Aorta	Aorta
25	chr15:42908600-42914200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:42908800-42915600	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
28	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:42910200-42914600	Weak transcription	Ovary	ovary
30	chr15:42910200-42916200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:42910200-42927800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:42910200-42929800	Weak transcription	Fetal Heart	heart
33	chr15:42910600-42920800	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:42910600-42927600	Weak transcription	Left Ventricle	heart
35	chr15:42911000-42920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:42912200-42927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:42912200-42927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:42912200-42927800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:42912200-42929400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:42912400-42914600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:42912600-42920800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:42912600-42927800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:42912800-42913800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:42912800-42913800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:42912800-42913800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr15:42912800-42914000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:42912800-42914800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:42912800-42924600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:42912800-42924800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:42912800-42933200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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