Variant report

Variant	rs8033336
Chromosome Location	chr15:43035131-43035132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:43033816..43036237-chr15:43039881..43041470,2	K562	blood:
2	chr15:43033733..43038217-chr15:43039920..43044631,5	K562	blood:
3	chr15:43028376..43030803-chr15:43034543..43038409,3	K562	blood:
4	chr15:43034608..43036294-chr15:43036367..43039300,2	K562	blood:
5	chr15:43024047..43026757-chr15:43034697..43037406,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STARD9-1	chr15:43034200-43035400	ENSG00000246283.2
2	lnc-CDAN1-1	chr15:43033744-43035546	NONHSAT042032

No data

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10467975	0.93[ASW][hapmap];0.85[YRI][hapmap]
rs11070382	0.93[ASW][hapmap];0.81[YRI][hapmap]
rs11632809	0.81[AFR][1000 genomes]
rs11853250	0.86[ASW][hapmap]
rs11854550	0.95[YRI][hapmap]
rs12323990	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12324135	0.87[EUR][1000 genomes]
rs12591415	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12592374	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592573	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594325	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12594378	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594600	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594696	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594699	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594724	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594765	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12595722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16957031	0.85[YRI][hapmap]
rs16957037	0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.84[YRI][hapmap]
rs16957043	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs16957055	0.86[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957061	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957063	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957165	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs16957244	0.92[ASW][hapmap];0.81[YRI][hapmap]
rs1915242	0.87[EUR][1000 genomes]
rs1915243	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2682073	1.00[ASW][hapmap];0.85[LWK][hapmap];0.86[YRI][hapmap]
rs28431056	1.00[ASN][1000 genomes]
rs28437884	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28542286	0.82[AFR][1000 genomes]
rs28661826	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28680600	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28699522	0.87[EUR][1000 genomes]
rs28736688	1.00[EUR][1000 genomes]
rs34302400	0.81[AFR][1000 genomes]
rs3742992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742995	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4334272	0.93[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56046122	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56839966	0.87[EUR][1000 genomes]
rs58237318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58548142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60723187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61747153	0.98[ASN][1000 genomes]
rs6493056	1.00[MEX][hapmap]
rs6493065	0.86[ASW][hapmap];0.86[LWK][hapmap];0.95[YRI][hapmap]
rs7169231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169238	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7174028	0.93[ASW][hapmap]
rs7178483	1.00[EUR][1000 genomes]
rs7181238	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs73408611	0.87[EUR][1000 genomes]
rs73408619	1.00[EUR][1000 genomes]
rs73410923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73410927	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410931	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410940	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73410959	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73410961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410969	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410971	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410973	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410981	0.87[EUR][1000 genomes]
rs8023743	1.00[EUR][1000 genomes]
rs8028365	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8028699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8031767	0.93[ASW][hapmap];0.81[YRI][hapmap]
rs8036733	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8043143	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9920092	0.95[YRI][hapmap]
rs9920562	0.93[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9920624	0.81[ASW][hapmap];0.87[LWK][hapmap];0.95[YRI][hapmap]
rs9920935	0.86[LWK][hapmap];0.90[YRI][hapmap]
rs9944270	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43029400-43051200	Weak transcription	Spleen	Spleen
2	chr15:43029600-43045000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:43029800-43037800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:43029800-43037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:43029800-43037800	Weak transcription	Fetal Stomach	stomach
6	chr15:43029800-43037800	Weak transcription	Lung	lung
7	chr15:43029800-43037800	Weak transcription	Ovary	ovary
8	chr15:43029800-43041400	Weak transcription	Psoas Muscle	Psoas
9	chr15:43029800-43043200	Weak transcription	Left Ventricle	heart
10	chr15:43029800-43043800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:43029800-43044000	Weak transcription	Right Ventricle	heart
12	chr15:43029800-43044200	Weak transcription	Fetal Brain Male	brain
13	chr15:43029800-43047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:43029800-43047800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:43029800-43050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:43029800-43051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:43029800-43051200	Weak transcription	Esophagus	oesophagus
18	chr15:43029800-43051200	Weak transcription	Gastric	stomach
19	chr15:43029800-43051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:43029800-43071000	Weak transcription	Pancreas	Pancrea
21	chr15:43030000-43035400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr15:43030000-43035600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:43030000-43035600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:43030000-43036200	Weak transcription	Adipose Nuclei	Adipose
25	chr15:43030000-43036400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:43030000-43036400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:43030000-43036400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:43030000-43036400	Weak transcription	Brain Substantia Nigra	brain
29	chr15:43030000-43036400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:43030000-43036600	Weak transcription	Placenta	Placenta
31	chr15:43030000-43036600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:43030000-43037200	Weak transcription	NH-A	brain
33	chr15:43030000-43037400	Weak transcription	Primary B cells from cord blood	blood
34	chr15:43030000-43037600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:43030000-43037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:43030000-43037600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:43030000-43037800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:43030000-43037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:43030000-43037800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:43030000-43037800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:43030000-43037800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:43030000-43037800	Weak transcription	Brain Angular Gyrus	brain
43	chr15:43030000-43037800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:43030000-43037800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:43030000-43037800	Weak transcription	HUVEC	blood vessel
46	chr15:43030000-43038000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr15:43030000-43038000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:43030000-43038000	Weak transcription	Fetal Thymus	thymus
49	chr15:43030000-43038000	Weak transcription	HSMMtube	muscle
50	chr15:43030000-43039600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links