Variant report

Variant	rs16957120
Chromosome Location	chr15:43037511-43037512
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43033733..43038217-chr15:43039920..43044631,5	K562	blood:
2	chr15:43028376..43030803-chr15:43034543..43038409,3	K562	blood:
3	chr15:43034608..43036294-chr15:43036367..43039300,2	K562	blood:
4	chr15:43036520..43038696-chr15:43047355..43050009,2	K562	blood:

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10467975	0.80[YRI][hapmap]
rs11632809	0.86[AFR][1000 genomes]
rs11854550	0.91[YRI][hapmap]
rs12323990	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12324135	0.87[EUR][1000 genomes]
rs12591415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12592374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594325	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12594378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594724	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12595722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16957031	0.82[YRI][hapmap]
rs16957043	0.87[EUR][1000 genomes]
rs16957055	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16957063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16957165	0.85[YRI][hapmap]
rs1915242	0.87[EUR][1000 genomes]
rs1915243	0.87[EUR][1000 genomes]
rs2682073	0.81[YRI][hapmap]
rs28431056	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28437884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28542286	0.87[AFR][1000 genomes]
rs28661826	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28680600	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28699522	0.87[EUR][1000 genomes]
rs28736688	1.00[EUR][1000 genomes]
rs34302400	0.86[AFR][1000 genomes]
rs3742992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4334272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56046122	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56839966	0.87[EUR][1000 genomes]
rs58237318	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58548142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60723187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61747153	0.98[ASN][1000 genomes]
rs6493065	0.90[YRI][hapmap]
rs7169231	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169238	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7178483	1.00[EUR][1000 genomes]
rs7181238	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs73408611	0.87[EUR][1000 genomes]
rs73408619	1.00[EUR][1000 genomes]
rs73410923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73410927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410931	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410940	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73410959	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73410961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410981	0.87[EUR][1000 genomes]
rs8023743	1.00[EUR][1000 genomes]
rs8028365	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8028699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8033336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036733	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8042980	0.83[AFR][1000 genomes]
rs8043143	1.00[EUR][1000 genomes]
rs9920092	0.91[YRI][hapmap]
rs9920562	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs9920624	0.90[YRI][hapmap]
rs9920935	0.85[YRI][hapmap]
rs9944270	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43029400-43051200	Weak transcription	Spleen	Spleen
2	chr15:43029600-43045000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:43029800-43037800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:43029800-43037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:43029800-43037800	Weak transcription	Fetal Stomach	stomach
6	chr15:43029800-43037800	Weak transcription	Lung	lung
7	chr15:43029800-43037800	Weak transcription	Ovary	ovary
8	chr15:43029800-43041400	Weak transcription	Psoas Muscle	Psoas
9	chr15:43029800-43043200	Weak transcription	Left Ventricle	heart
10	chr15:43029800-43043800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:43029800-43044000	Weak transcription	Right Ventricle	heart
12	chr15:43029800-43044200	Weak transcription	Fetal Brain Male	brain
13	chr15:43029800-43047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:43029800-43047800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:43029800-43050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:43029800-43051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:43029800-43051200	Weak transcription	Esophagus	oesophagus
18	chr15:43029800-43051200	Weak transcription	Gastric	stomach
19	chr15:43029800-43051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:43029800-43071000	Weak transcription	Pancreas	Pancrea
21	chr15:43030000-43037600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:43030000-43037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:43030000-43037600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:43030000-43037800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:43030000-43037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:43030000-43037800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:43030000-43037800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:43030000-43037800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:43030000-43037800	Weak transcription	Brain Angular Gyrus	brain
30	chr15:43030000-43037800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:43030000-43037800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:43030000-43037800	Weak transcription	HUVEC	blood vessel
33	chr15:43030000-43038000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:43030000-43038000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:43030000-43038000	Weak transcription	Fetal Thymus	thymus
36	chr15:43030000-43038000	Weak transcription	HSMMtube	muscle
37	chr15:43030000-43039600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:43030000-43041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:43030000-43042000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:43030000-43042800	Weak transcription	Fetal Brain Female	brain
41	chr15:43030000-43043000	Weak transcription	Stomach Mucosa	stomach
42	chr15:43030000-43043200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:43030000-43043400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:43030000-43043400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr15:43030000-43043600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:43030000-43043600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:43030000-43043600	Weak transcription	Aorta	Aorta
48	chr15:43030000-43043600	Weak transcription	Brain Germinal Matrix	brain
49	chr15:43030000-43043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr15:43030000-43043800	Weak transcription	Thymus	Thymus

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