The 2.0 version of rSNPBase

Variant report

Variant rs73408611
Chromosome Location chr15:42945580-42945581
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42898000-42967800 Weak transcription Fetal Intestine Small intestine
2 chr15:42908800-43015000 Weak transcription Fetal Kidney kidney
3 chr15:42909600-42966400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr15:42923000-42958200 Weak transcription Hela-S3 cervix
5 chr15:42925200-42966000 Weak transcription NH-A brain
6 chr15:42925200-42966800 Weak transcription NHLF lung
7 chr15:42925600-42961000 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr15:42926400-42947200 Weak transcription Fetal Brain Male brain
9 chr15:42928200-42973600 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr15:42928200-42974000 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr15:42930600-42964000 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr15:42930800-42957400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr15:42931200-42949800 Weak transcription Fetal Heart heart
14 chr15:42931200-42954600 Weak transcription Placenta Placenta
15 chr15:42931200-42963400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr15:42931400-42955800 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr15:42931600-42948800 Weak transcription Brain Anterior Caudate brain
18 chr15:42931600-42953600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr15:42931600-42955400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr15:42931800-42955000 Weak transcription Fetal Lung lung
21 chr15:42931800-42955000 Weak transcription Rectal Smooth Muscle rectum
22 chr15:42931800-42955600 Weak transcription Lung lung
23 chr15:42931800-42957200 Weak transcription Primary B cells from cord blood blood
24 chr15:42931800-42958200 Weak transcription Brain Angular Gyrus brain
25 chr15:42931800-42968000 Weak transcription HSMM muscle
26 chr15:42932000-42958400 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr15:42932200-42966200 Weak transcription Primary B cells from peripheral blood blood
28 chr15:42932400-42960000 Weak transcription Primary T cells from cord blood blood
29 chr15:42932600-42953200 Weak transcription Fetal Intestine Large intestine
30 chr15:42932600-42955400 Weak transcription Aorta Aorta
31 chr15:42932800-42953000 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr15:42932800-42954000 Weak transcription Brain Germinal Matrix brain
33 chr15:42934800-42953000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr15:42939200-42961200 Weak transcription Brain Cingulate Gyrus brain
35 chr15:42940400-42967800 Weak transcription HepG2 liver
36 chr15:42942600-42950000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr15:42942800-42955000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr15:42942800-42955400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr15:42942800-42955600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr15:42942800-42955800 Weak transcription Brain Substantia Nigra brain
41 chr15:42942800-42967200 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr15:42942800-42973600 Weak transcription Psoas Muscle Psoas
43 chr15:42943000-42957600 Weak transcription Brain Inferior Temporal Lobe brain
44 chr15:42943200-42945800 Strong transcription Duodenum Smooth Muscle Duodenum
45 chr15:42943400-42950000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr15:42943800-42947200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr15:42944000-42945600 Strong transcription Colon Smooth Muscle Colon
48 chr15:42944000-42945600 Strong transcription Stomach Smooth Muscle stomach
49 chr15:42944000-42945800 Strong transcription GM12878-XiMat blood
50 chr15:42944000-42947800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015