Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12385935	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12442656	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12905899	0.81[CEU][hapmap]
rs12911094	0.88[GIH][hapmap]
rs1372753	0.80[CHD][hapmap];0.85[GIH][hapmap]
rs1442640	0.88[ASN][1000 genomes]
rs2414460	0.92[EUR][1000 genomes]
rs2682051	0.81[CEU][hapmap]
rs2682054	0.81[CEU][hapmap]
rs2682059	0.81[CEU][hapmap]
rs2713924	0.81[CEU][hapmap]
rs2713933	0.81[CEU][hapmap]
rs2713935	1.00[CEU][hapmap]
rs2713941	0.81[CEU][hapmap]
rs2718934	0.81[CEU][hapmap]
rs2718941	0.81[CEU][hapmap]
rs34224072	0.90[ASN][1000 genomes]
rs34777702	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34979470	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4310791	0.81[CEU][hapmap];0.88[GIH][hapmap]
rs4774232	0.81[CEU][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6493835	0.81[ASN][1000 genomes]
rs7165270	0.94[ASN][1000 genomes]
rs7175745	0.95[ASN][1000 genomes]
rs7179706	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7183363	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7496025	0.81[CEU][hapmap];0.88[GIH][hapmap]
rs8024031	0.80[CHD][hapmap];0.88[GIH][hapmap]
rs8029097	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56363600-56383800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:56369800-56385600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56374000-56375400	Enhancers	Placenta	Placenta

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