Variant report

Variant	rs6495129
Chromosome Location	chr15:75196717-75196718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:75196692-75199427	HEK293-T-REx	kidney:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75133790..75137554-chr15:75195204..75200578,14	MCF-7	breast:
2	chr15:75132852..75135633-chr15:75196341..75200571,3	K562	blood:
3	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
4	chr15:75118671..75120233-chr15:75195221..75196844,2	MCF-7	breast:
5	chr15:75106425..75109866-chr15:75194552..75196876,4	MCF-7	breast:
6	chr15:75161914..75167776-chr15:75191644..75199761,13	MCF-7	breast:
7	chr15:75194246..75197133-chr15:75234346..75235847,2	MCF-7	breast:
8	chr15:75074194..75076388-chr15:75195576..75199734,3	MCF-7	breast:
9	chr15:75191256..75201000-chr15:75228549..75233626,13	K562	blood:
10	chr15:75196237..75205947-chr15:75227299..75233104,18	K562	blood:
11	chr15:74910181..74911703-chr15:75194516..75196837,2	MCF-7	breast:
12	chr15:75196272..75199556-chr15:75229911..75232060,4	MCF-7	breast:
13	chr15:75181107..75185393-chr15:75190667..75200295,16	MCF-7	breast:
14	chr15:75164429..75167842-chr15:75196018..75198435,3	K562	blood:
15	chr15:75194037..75196796-chr15:75249908..75252544,2	K562	blood:
16	chr15:75196219..75200292-chr15:75228985..75231952,6	MCF-7	breast:

No data

Variant related genes	Relation type
FAM219B	TF binding region
ENSG00000261606	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1130741	0.83[ASN][1000 genomes]
rs4886636	0.83[ASN][1000 genomes]
rs6495128	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68036747	0.84[AMR][1000 genomes]
rs72625793	0.84[AMR][1000 genomes]
rs7495739	0.80[ASN][1000 genomes]
rs8025447	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75183200-75197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:75185200-75197000	Weak transcription	Fetal Heart	heart
3	chr15:75187600-75197200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:75187800-75196800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:75187800-75197400	Strong transcription	Fetal Thymus	thymus
6	chr15:75188000-75196800	Strong transcription	Brain Germinal Matrix	brain
7	chr15:75188000-75197000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:75188000-75197000	Strong transcription	Fetal Brain Female	brain
9	chr15:75188000-75197600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:75188200-75197400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75188200-75197400	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:75188200-75197600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:75188400-75197400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:75188400-75197400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:75188400-75197600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:75188600-75196800	Strong transcription	NHEK	skin
17	chr15:75188600-75197400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:75188600-75197400	Strong transcription	Brain Angular Gyrus	brain
19	chr15:75188800-75197400	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr15:75188800-75197400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr15:75188800-75197400	Strong transcription	Osteobl	bone
22	chr15:75189200-75197400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:75189400-75197200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:75189400-75197400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:75190200-75197000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:75190200-75197200	Strong transcription	Lung	lung
27	chr15:75190400-75197000	Strong transcription	Hela-S3	cervix
28	chr15:75190600-75197000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr15:75190600-75197600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:75190600-75198200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr15:75190800-75197400	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr15:75191200-75197000	Strong transcription	Rectal Smooth Muscle	rectum
33	chr15:75191200-75197000	Strong transcription	Dnd41	blood
34	chr15:75191200-75197200	Strong transcription	Brain Substantia Nigra	brain
35	chr15:75191200-75197400	Strong transcription	Placenta	Placenta
36	chr15:75191600-75197000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:75191600-75197400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:75191800-75197200	Strong transcription	Colonic Mucosa	Colon
39	chr15:75192200-75197000	Strong transcription	Fetal Lung	lung
40	chr15:75192200-75197200	Strong transcription	HMEC	breast
41	chr15:75192400-75197400	Strong transcription	HUVEC	blood vessel
42	chr15:75193400-75197400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr15:75193600-75196800	Weak transcription	Thymus	Thymus
44	chr15:75193600-75197800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:75193800-75196800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:75194000-75196800	Strong transcription	Pancreas	Pancrea
47	chr15:75194000-75197200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:75194200-75196800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:75194200-75196800	Strong transcription	Fetal Stomach	stomach
50	chr15:75194200-75197000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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