Variant report

Variant	rs72625793
Chromosome Location	chr15:75207083-75207084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75204201..75207198-chr15:75248620..75251894,3	MCF-7	breast:
2	chr15:75197065..75200816-chr15:75202380..75207504,10	K562	blood:
3	chr15:75205785..75208557-chr15:75213491..75215641,2	MCF-7	breast:
4	chr15:75194057..75196372-chr15:75204591..75207418,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178718	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000178761	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12050585	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12385940	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28844983	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886642	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495128	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6495129	0.84[AMR][1000 genomes]
rs68036747	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7182183	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7495033	0.85[AFR][1000 genomes]
rs8025170	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8029351	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8030528	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8037152	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv3312325	chr15:75203053-75210647	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv3312326	chr15:75203067-75210644	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75209400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
4	chr15:75200000-75207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:75200000-75207200	Weak transcription	Gastric	stomach
6	chr15:75200000-75209600	Weak transcription	Psoas Muscle	Psoas
7	chr15:75200000-75209800	Weak transcription	Ovary	ovary
8	chr15:75200000-75209800	Weak transcription	Small Intestine	intestine
9	chr15:75200000-75211000	Weak transcription	Fetal Kidney	kidney
10	chr15:75200000-75211600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
13	chr15:75200200-75207200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:75200200-75207400	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:75200200-75207600	Weak transcription	Fetal Lung	lung
16	chr15:75200200-75208800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:75200200-75209800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr15:75200200-75209800	Weak transcription	HepG2	liver
19	chr15:75200200-75209800	Weak transcription	HMEC	breast
20	chr15:75200200-75210800	Weak transcription	Fetal Brain Male	brain
21	chr15:75200200-75211000	Weak transcription	NHDF-Ad	bronchial
22	chr15:75200400-75207400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:75200400-75207600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:75200400-75211000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:75200400-75211400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:75200400-75211400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:75200400-75221200	Weak transcription	Fetal Heart	heart
28	chr15:75201000-75213000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:75201000-75224600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:75202000-75224400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr15:75202200-75211800	Strong transcription	Fetal Intestine Small	intestine
32	chr15:75202200-75212000	Strong transcription	Fetal Stomach	stomach
33	chr15:75202200-75212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:75202200-75224400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:75202400-75208000	Strong transcription	Fetal Brain Female	brain
36	chr15:75202600-75224800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:75202600-75225000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr15:75203000-75212600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:75203000-75224400	Strong transcription	Fetal Muscle Leg	muscle
40	chr15:75203000-75224600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:75203200-75212800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr15:75203200-75222200	Strong transcription	Left Ventricle	heart
43	chr15:75203400-75218000	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:75203800-75208600	Strong transcription	Osteobl	bone
45	chr15:75203800-75223000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:75203800-75224200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr15:75203800-75224400	Strong transcription	Fetal Intestine Large	intestine
48	chr15:75203800-75224600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:75204000-75208000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:75204000-75208000	Strong transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links